Analysis of interatomic Contacts of Structural Units in PDB entry:
4WYM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4WYM entry

There are 23 chains in PDB entry 4WYM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 1	GLY 220
B	PRO 1	GLY 220
C	PRO 1	GLN 219
D	PRO 1	GLN 219
E	PRO 1	GLY 220
F	PRO 1	GLY 220
G	PRO 1	GLN 219
H	PRO 1	GLN 219
I	PRO 1	GLN 219
J	PRO 1	GLN 219
K	PRO 1	GLN 219
L	PRO 1	GLN 219
M	PRO 313	PRO 325
N	THR 312	PRO 325
O	PRO 313	PRO 325
P	THR 312	PRO 325
Q	PRO 313	PRO 325
R	THR 312	PRO 325
S	GLY 311	PRO 325
T	PRO 313	PRO 325
U	PRO 313	PRO 325
V	PRO 313	PRO 325
W	PRO 313	PRO 325

There are146 helices in PDB entry 4WYM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	31	Right-handed alpha
Helix 2	AA2	A	35	44	Right-handed alpha
Helix 3	AA3	A	48	58	Right-handed alpha
Helix 4	AA4	A	62	84	Right-handed alpha
Helix 5	AA5	A	100	105	Right-handed alpha
Helix 6	AA6	A	110	119	Right-handed alpha
Helix 7	AA7	A	125	146	Right-handed alpha
Helix 8	AA8	A	149	153	Right-handed 310
Helix 9	AA9	A	160	176	Right-handed alpha
Helix 10	AB1	A	184	193	Right-handed alpha
Helix 11	AB2	A	195	202	Right-handed alpha
Helix 12	AB3	A	210	218	Right-handed alpha
Helix 13	AB4	B	16	31	Right-handed alpha
Helix 14	AB5	B	35	44	Right-handed alpha
Helix 15	AB6	B	48	58	Right-handed alpha
Helix 16	AB7	B	62	83	Right-handed alpha
Helix 17	AB8	B	100	105	Right-handed alpha
Helix 18	AB9	B	110	120	Right-handed alpha
Helix 19	AC1	B	125	145	Right-handed alpha
Helix 20	AC2	B	149	153	Right-handed 310
Helix 21	AC3	B	160	176	Right-handed alpha
Helix 22	AC4	B	179	193	Right-handed alpha
Helix 23	AC5	B	195	206	Right-handed alpha
Helix 24	AC6	B	210	218	Right-handed alpha
Helix 25	AC7	C	16	31	Right-handed alpha
Helix 26	AC8	C	35	44	Right-handed alpha
Helix 27	AC9	C	48	58	Right-handed alpha
Helix 28	AD1	C	62	84	Right-handed alpha
Helix 29	AD2	C	100	105	Right-handed alpha
Helix 30	AD3	C	110	119	Right-handed alpha
Helix 31	AD4	C	125	145	Right-handed alpha
Helix 32	AD5	C	149	153	Right-handed 310
Helix 33	AD6	C	160	176	Right-handed alpha
Helix 34	AD7	C	178	188	Right-handed alpha
Helix 35	AD8	C	188	193	Right-handed alpha
Helix 36	AD9	C	195	204	Right-handed alpha
Helix 37	AE1	C	210	218	Right-handed alpha
Helix 38	AE2	D	16	31	Right-handed alpha
Helix 39	AE3	D	35	44	Right-handed alpha
Helix 40	AE4	D	48	58	Right-handed alpha
Helix 41	AE5	D	62	84	Right-handed alpha
Helix 42	AE6	D	100	105	Right-handed alpha
Helix 43	AE7	D	110	119	Right-handed alpha
Helix 44	AE8	D	125	145	Right-handed alpha
Helix 45	AE9	D	149	153	Right-handed 310
Helix 46	AF1	D	160	176	Right-handed alpha
Helix 47	AF2	D	186	191	Right-handed alpha
Helix 48	AF3	D	195	203	Right-handed alpha
Helix 49	AF4	D	210	218	Right-handed alpha
Helix 50	AF5	E	16	31	Right-handed alpha
Helix 51	AF6	E	35	44	Right-handed alpha
Helix 52	AF7	E	48	58	Right-handed alpha
Helix 53	AF8	E	62	84	Right-handed alpha
Helix 54	AF9	E	100	105	Right-handed alpha
Helix 55	AG1	E	110	120	Right-handed alpha
Helix 56	AG2	E	125	145	Right-handed alpha
Helix 57	AG3	E	149	153	Right-handed 310
Helix 58	AG4	E	160	176	Right-handed alpha
Helix 59	AG5	E	178	189	Right-handed alpha
Helix 60	AG6	E	195	206	Right-handed alpha
Helix 61	AG7	E	210	218	Right-handed alpha
Helix 62	AG8	F	16	31	Right-handed alpha
Helix 63	AG9	F	35	44	Right-handed alpha
Helix 64	AH1	F	48	58	Right-handed alpha
Helix 65	AH2	F	62	84	Right-handed alpha
Helix 66	AH3	F	100	105	Right-handed alpha
Helix 67	AH4	F	110	119	Right-handed alpha
Helix 68	AH5	F	125	145	Right-handed alpha
Helix 69	AH6	F	149	153	Right-handed 310
Helix 70	AH7	F	160	176	Right-handed alpha
Helix 71	AH8	F	178	193	Right-handed alpha
Helix 72	AH9	F	195	206	Right-handed alpha
Helix 73	AI1	F	210	218	Right-handed alpha
Helix 74	AI2	G	16	31	Right-handed alpha
Helix 75	AI3	G	35	44	Right-handed alpha
Helix 76	AI4	G	48	58	Right-handed alpha
Helix 77	AI5	G	62	84	Right-handed alpha
Helix 78	AI6	G	100	105	Right-handed alpha
Helix 79	AI7	G	110	120	Right-handed alpha
Helix 80	AI8	G	125	145	Right-handed alpha
Helix 81	AI9	G	149	153	Right-handed 310
Helix 82	AJ1	G	160	176	Right-handed alpha
Helix 83	AJ2	G	186	193	Right-handed alpha
Helix 84	AJ3	G	195	204	Right-handed alpha
Helix 85	AJ4	G	210	218	Right-handed alpha
Helix 86	AJ5	H	16	31	Right-handed alpha
Helix 87	AJ6	H	35	44	Right-handed alpha
Helix 88	AJ7	H	48	58	Right-handed alpha
Helix 89	AJ8	H	62	84	Right-handed alpha
Helix 90	AJ9	H	100	105	Right-handed alpha
Helix 91	AK1	H	110	119	Right-handed alpha
Helix 92	AK2	H	125	145	Right-handed alpha
Helix 93	AK3	H	160	175	Right-handed alpha
Helix 94	AK4	H	187	193	Right-handed alpha
Helix 95	AK5	H	195	203	Right-handed alpha
Helix 96	AK6	H	210	216	Right-handed alpha
Helix 97	AK7	I	16	31	Right-handed alpha
Helix 98	AK8	I	35	44	Right-handed alpha
Helix 99	AK9	I	48	58	Right-handed alpha
Helix 100	AL1	I	62	84	Right-handed alpha
Helix 101	AL2	I	100	105	Right-handed alpha
Helix 102	AL3	I	110	119	Right-handed alpha
Helix 103	AL4	I	125	145	Right-handed alpha
Helix 104	AL5	I	149	153	Right-handed 310
Helix 105	AL6	I	160	175	Right-handed alpha
Helix 106	AL7	I	186	193	Right-handed alpha
Helix 107	AL8	I	195	206	Right-handed alpha
Helix 108	AL9	I	210	218	Right-handed alpha
Helix 109	AM1	J	16	31	Right-handed alpha
Helix 110	AM2	J	35	44	Right-handed alpha
Helix 111	AM3	J	48	58	Right-handed alpha
Helix 112	AM4	J	62	84	Right-handed alpha
Helix 113	AM5	J	100	105	Right-handed alpha
Helix 114	AM6	J	110	119	Right-handed alpha
Helix 115	AM7	J	125	145	Right-handed alpha
Helix 116	AM8	J	149	153	Right-handed 310
Helix 117	AM9	J	160	175	Right-handed alpha
Helix 118	AN1	J	178	188	Right-handed alpha
Helix 119	AN2	J	188	193	Right-handed alpha
Helix 120	AN3	J	195	204	Right-handed alpha
Helix 121	AN4	J	210	218	Right-handed alpha
Helix 122	AN5	K	16	31	Right-handed alpha
Helix 123	AN6	K	35	44	Right-handed alpha
Helix 124	AN7	K	48	58	Right-handed alpha
Helix 125	AN8	K	62	84	Right-handed alpha
Helix 126	AN9	K	100	105	Right-handed alpha
Helix 127	AO1	K	110	120	Right-handed alpha
Helix 128	AO2	K	125	145	Right-handed alpha
Helix 129	AO3	K	149	153	Right-handed 310
Helix 130	AO4	K	160	176	Right-handed alpha
Helix 131	AO5	K	184	193	Right-handed alpha
Helix 132	AO6	K	195	206	Right-handed alpha
Helix 133	AO7	K	210	218	Right-handed alpha
Helix 134	AO8	L	16	31	Right-handed alpha
Helix 135	AO9	L	35	44	Right-handed alpha
Helix 136	AP1	L	48	58	Right-handed alpha
Helix 137	AP2	L	62	84	Right-handed alpha
Helix 138	AP3	L	100	105	Right-handed alpha
Helix 139	AP4	L	110	120	Right-handed alpha
Helix 140	AP5	L	125	145	Right-handed alpha
Helix 141	AP6	L	149	153	Right-handed 310
Helix 142	AP7	L	160	176	Right-handed alpha
Helix 143	AP8	L	181	188	Right-handed alpha
Helix 144	AP9	L	188	193	Right-handed alpha
Helix 145	AQ1	L	195	205	Right-handed alpha
Helix 146	AQ2	L	210	217	Right-handed alpha

There are 12 sheets in PDB entry 4WYM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	4	first strand
Strand 2	A	10	12	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	4	first strand
Strand 2	B	10	12	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	4	first strand
Strand 2	C	10	12	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	4	first strand
Strand 2	D	10	12	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2	4	first strand
Strand 2	E	10	12	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2	4	first strand
Strand 2	F	10	12	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	2	4	first strand
Strand 2	G	10	12	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	2	4	first strand
Strand 2	H	10	12	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	2	4	first strand
Strand 2	I	10	12	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	2	4	first strand
Strand 2	J	10	12	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	2	4	first strand
Strand 2	K	10	12	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	2	4	first strand
Strand 2	L	10	12	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4WYM

Analysis of interatomic Contacts of Structural Units in PDB entry:
4WYM