Analysis of interatomic Contacts of Structural Units in PDB entry:
4X6D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4X6D entry

There are 7 chains in PDB entry 4X6D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 7	GLU 278
B	ILE 1	TRP 95
C	PRO 7	LEU 268
D	ILE 1	ASP 96
E	GLU 2	PRO 201
F	GLY 3	ARG 243
G	GLU 2	SER 166

There are 26 helices in PDB entry 4X6D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	51	55	Right-handed 310
Helix 2	AA2	A	59	83	Right-handed alpha
Helix 3	AA3	A	137	149	Right-handed alpha
Helix 4	AA4	A	151	164	Right-handed alpha
Helix 5	AA5	A	164	177	Right-handed alpha
Helix 6	AA6	A	254	256	Right-handed 310
Helix 7	AA7	A	265	269	Right-handed 310
Helix 8	AA8	C	59	82	Right-handed alpha
Helix 9	AA9	C	85	89	Right-handed 310
Helix 10	AB1	C	137	149	Right-handed alpha
Helix 11	AB2	C	151	164	Right-handed alpha
Helix 12	AB3	C	164	178	Right-handed alpha
Helix 13	AB4	E	79	83	Right-handed 310
Helix 14	AB5	E	165	168	Right-handed 310
Helix 15	AB6	E	184	188	Right-handed 310
Helix 16	AB7	F	82	86	Right-handed 310
Helix 17	AB8	F	117	121	Right-handed 310
Helix 18	AB9	F	132	140	Right-handed alpha
Helix 19	AC1	F	199	203	Right-handed alpha
Helix 20	AC2	G	79	83	Right-handed 310
Helix 21	AC3	G	165	168	Right-handed 310
Helix 22	AC4	G	184	188	Right-handed 310
Helix 23	AC5	H	82	86	Right-handed 310
Helix 24	AC6	H	117	121	Right-handed 310
Helix 25	AC7	H	132	140	Right-handed alpha
Helix 26	AC8	H	199	203	Right-handed alpha

There are 32 sheets in PDB entry 4X6D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	49	first strand
Strand 2	A	35	41	anti-parallel
Strand 3	A	26	32	anti-parallel
Strand 4	A	8	17	anti-parallel
Strand 5	A	95	104	anti-parallel
Strand 6	A	109	118	anti-parallel
Strand 7	A	121	127	anti-parallel
Strand 8	A	130	133	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	193	first strand
Strand 2	A	201	211	anti-parallel
Strand 3	A	243	252	anti-parallel
Strand 4	A	231	232	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	193	first strand
Strand 2	A	201	211	anti-parallel
Strand 3	A	243	252	anti-parallel
Strand 4	A	236	237	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	226	first strand
Strand 2	A	217	222	anti-parallel
Strand 3	A	260	264	anti-parallel
Strand 4	A	273	276	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	11	first strand
Strand 2	B	21	30	anti-parallel
Strand 3	B	62	70	anti-parallel
Strand 4	B	50	51	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	11	first strand
Strand 2	B	21	30	anti-parallel
Strand 3	B	62	70	anti-parallel
Strand 4	B	55	56	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	37	first strand
Strand 2	B	80	84	anti-parallel
Strand 3	B	91	93	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	49	first strand
Strand 2	C	35	39	anti-parallel
Strand 3	C	25	32	anti-parallel
Strand 4	C	8	18	anti-parallel
Strand 5	C	94	105	anti-parallel
Strand 6	C	108	118	anti-parallel
Strand 7	C	122	127	anti-parallel
Strand 8	C	130	133	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	207	211	first strand
Strand 2	C	243	247	anti-parallel
Strand 3	C	232	237	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	10	first strand
Strand 2	D	23	30	anti-parallel
Strand 3	D	62	68	anti-parallel
Strand 4	D	50	51	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	10	first strand
Strand 2	D	23	30	anti-parallel
Strand 3	D	62	68	anti-parallel
Strand 4	D	55	56	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	45	first strand
Strand 2	D	36	41	anti-parallel
Strand 3	D	80	83	anti-parallel
Strand 4	D	91	93	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	5	first strand
Strand 2	E	18	24	anti-parallel
Strand 3	E	70	75	anti-parallel
Strand 4	E	60	65	anti-parallel
Strand 5	E	53	57	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	106	111	parallel
Strand 3	E	84	92	anti-parallel
Strand 4	E	29	37	anti-parallel
Strand 5	E	43	50	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	106	111	parallel
Strand 3	E	84	92	anti-parallel
Strand 4	E	101	102	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	120	124	first strand
Strand 2	E	134	138	anti-parallel
Strand 3	E	169	177	anti-parallel
Strand 4	E	155	156	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	120	124	first strand
Strand 2	E	134	138	anti-parallel
Strand 3	E	169	177	anti-parallel
Strand 4	E	160	164	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	19	25	anti-parallel
Strand 3	F	73	78	anti-parallel
Strand 4	F	64	67	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	14	first strand
Strand 2	F	110	115	parallel
Strand 3	F	87	94	anti-parallel
Strand 4	F	31	37	anti-parallel
Strand 5	F	43	51	anti-parallel
Strand 6	F	54	57	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	14	first strand
Strand 2	F	110	115	parallel
Strand 3	F	87	94	anti-parallel
Strand 4	F	105	106	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	125	129	first strand
Strand 2	F	141	151	anti-parallel
Strand 3	F	189	198	anti-parallel
Strand 4	F	171	173	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	125	129	first strand
Strand 2	F	141	151	anti-parallel
Strand 3	F	189	198	anti-parallel
Strand 4	F	178	179	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	165	167	first strand
Strand 2	F	156	162	anti-parallel
Strand 3	F	208	215	anti-parallel
Strand 4	F	234	241	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	5	first strand
Strand 2	G	18	24	anti-parallel
Strand 3	G	70	75	anti-parallel
Strand 4	G	60	65	anti-parallel
Strand 5	G	53	57	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	13	first strand
Strand 2	G	106	111	parallel
Strand 3	G	84	92	anti-parallel
Strand 4	G	29	37	anti-parallel
Strand 5	G	44	50	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	13	first strand
Strand 2	G	106	111	parallel
Strand 3	G	84	92	anti-parallel
Strand 4	G	101	102	anti-parallel

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There are 8 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	155	156	first strand
Strand 2	G	169	177	anti-parallel
Strand 3	G	133	138	anti-parallel
Strand 4	G	120	126	anti-parallel
Strand 5	H	125	130	anti-parallel
Strand 6	H	141	151	anti-parallel
Strand 7	H	189	198	anti-parallel
Strand 8	H	171	173	anti-parallel

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There are 8 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	160	164	first strand
Strand 2	G	169	177	anti-parallel
Strand 3	G	133	138	anti-parallel
Strand 4	G	120	126	anti-parallel
Strand 5	H	125	130	anti-parallel
Strand 6	H	141	151	anti-parallel
Strand 7	H	189	198	anti-parallel
Strand 8	H	178	179	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	7	first strand
Strand 2	H	19	25	anti-parallel
Strand 3	H	73	78	anti-parallel
Strand 4	H	64	67	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	14	first strand
Strand 2	H	110	115	parallel
Strand 3	H	87	94	anti-parallel
Strand 4	H	31	37	anti-parallel
Strand 5	H	43	51	anti-parallel
Strand 6	H	54	57	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	14	first strand
Strand 2	H	110	115	parallel
Strand 3	H	87	94	anti-parallel
Strand 4	H	105	106	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	165	167	first strand
Strand 2	H	156	162	anti-parallel
Strand 3	H	208	215	anti-parallel
Strand 4	H	234	241	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4X6D

Analysis of interatomic Contacts of Structural Units in PDB entry:
4X6D