Analysis of interatomic Contacts of Structural Units in PDB entry:
4Y7J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4Y7J entry

There are 5 chains in PDB entry 4Y7J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 4GLY 244
B
 PHE 4PRO 254
C
 PHE 4PHE 249
D
 PHE 4LYS 243
E
 PHE 4GLY 242
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 42 helices in PDB entry 4Y7J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 15Right-handed alpha
Helix 2
AA2
A
15 39Right-handed alpha
Helix 3
AA3
A
67 98Right-handed alpha
Helix 4
AA4
A
118 130Right-handed alpha
Helix 5
AA5
A
145 156Right-handed alpha
Helix 6
AA6
A
174 192Right-handed alpha
Helix 7
AA7
A
208 232Right-handed alpha
Helix 8
AA8
A
233 241Right-handed alpha
Helix 9
AA9
B
7 14Right-handed alpha
Helix 10
AB1
B
15 39Right-handed alpha
Helix 11
AB2
B
75 99Right-handed alpha
Helix 12
AB3
B
118 130Right-handed alpha
Helix 13
AB4
B
145 157Right-handed alpha
Helix 14
AB5
B
174 192Right-handed alpha
Helix 15
AB6
B
208 232Right-handed alpha
Helix 16
AB7
B
234 241Right-handed alpha
Helix 17
AB8
C
7 14Right-handed alpha
Helix 18
AB9
C
15 39Right-handed alpha
Helix 19
AC1
C
70 96Right-handed alpha
Helix 20
AC2
C
117 130Right-handed alpha
Helix 21
AC3
C
145 157Right-handed alpha
Helix 22
AC4
C
175 192Right-handed alpha
Helix 23
AC5
C
208 232Right-handed alpha
Helix 24
AC6
C
233 241Right-handed alpha
Helix 25
AC7
D
7 14Right-handed alpha
Helix 26
AC8
D
15 39Right-handed alpha
Helix 27
AC9
D
63 97Right-handed alpha
Helix 28
AD1
D
118 130Right-handed alpha
Helix 29
AD2
D
145 157Right-handed alpha
Helix 30
AD3
D
174 192Right-handed alpha
Helix 31
AD4
D
202 206Right-handed 310
Helix 32
AD5
D
208 230Right-handed alpha
Helix 33
AD6
D
234 241Right-handed alpha
Helix 34
AD7
E
6 15Right-handed alpha
Helix 35
AD8
E
15 39Right-handed alpha
Helix 36
AD9
E
68 99Right-handed alpha
Helix 37
AE1
E
117 128Right-handed alpha
Helix 38
AE2
E
142 144Right-handed 310
Helix 39
AE3
E
145 156Right-handed alpha
Helix 40
AE4
E
174 192Right-handed alpha
Helix 41
AE5
E
208 233Right-handed alpha
Helix 42
AE6
E
233 241Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 4Y7J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 110first strand
Strand 2
A
137 139parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 163first strand
Strand 2
B
196 197parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
137 140first strand
Strand 2
C
108 111parallel
Strand 3
C
162 165parallel
Strand 4
C
196 199parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
135 140first strand
Strand 2
D
106 111parallel
Strand 3
D
162 165parallel
Strand 4
D
196 199parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
137 139first strand
Strand 2
E
108 110parallel
Strand 3
E
162 165parallel
Strand 4
E
196 199parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il