Analysis of interatomic Contacts of Structural Units in PDB entry:
4YBH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YBH entry

There are 2 chains in PDB entry 4YBH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 21GLU 322
B
 ALA 2GLY 90
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 4YBH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
90 93Right-handed 310
Helix 2
AA2
A
292 296Right-handed 310
Helix 3
AA3
B
3 21Right-handed alpha
Helix 4
AA4
B
30 42Right-handed alpha
Helix 5
AA5
B
43 46Right-handed 310
Helix 6
AA6
B
49 61Right-handed alpha
Helix 7
AA7
B
69 88Right-handed alpha
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There are 8 sheets in PDB entry 4YBH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 29first strand
Strand 2
A
108 118parallel
Strand 3
A
95 102anti-parallel
Strand 4
A
48 55anti-parallel
Strand 5
A
62 64anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 36first strand
Strand 2
A
84 86anti-parallel
Strand 3
A
77 78anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 127first strand
Strand 2
A
139 149anti-parallel
Strand 3
A
186 194anti-parallel
Strand 4
A
172 179anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 134first strand
Strand 2
A
228 230parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 164first strand
Strand 2
A
154 159anti-parallel
Strand 3
A
206 211anti-parallel
Strand 4
A
220 221anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 243first strand
Strand 2
A
254 260anti-parallel
Strand 3
A
285 289anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 249first strand
Strand 2
A
316 320parallel
Strand 3
A
297 305anti-parallel
Strand 4
A
268 273anti-parallel
Strand 5
A
276 277anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 249first strand
Strand 2
A
316 320parallel
Strand 3
A
297 305anti-parallel
Strand 4
A
308 312anti-parallel
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