Analysis of interatomic Contacts of Structural Units in PDB entry:
4YCL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YCL entry

There is 1 chain in PDB entry 4YCL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 994
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 4YCL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 17Right-handed alpha
Helix 2
AA2
A
25 37Right-handed alpha
Helix 3
AA3
A
50 55Right-handed alpha
Helix 4
AA4
A
56 58Right-handed 310
Helix 5
AA5
A
59 78Right-handed alpha
Helix 6
AA6
A
89 106Right-handed alpha
Helix 7
AA7
A
117 121Right-handed 310
Helix 8
AA8
A
143 145Right-handed 310
Helix 9
AA9
A
226 229Right-handed 310
Helix 10
AB1
A
230 241Right-handed alpha
Helix 11
AB2
A
247 275Right-handed alpha
Helix 12
AB3
A
276 281Right-handed 310
Helix 13
AB4
A
282 286Right-handed 310
Helix 14
AB5
A
287 307Right-handed alpha
Helix 15
AB6
A
310 329Right-handed alpha
Helix 16
AB7
A
337 342Right-handed alpha
Helix 17
AB8
A
403 406Right-handed 310
Helix 18
AB9
A
407 420Right-handed alpha
Helix 19
AC1
A
439 453Right-handed alpha
Helix 20
AC2
A
469 478Right-handed alpha
Helix 21
AC3
A
517 524Right-handed alpha
Helix 22
AC4
A
538 555Right-handed alpha
Helix 23
AC5
A
583 588Right-handed alpha
Helix 24
AC6
A
606 618Right-handed alpha
Helix 25
AC7
A
628 639Right-handed alpha
Helix 26
AC8
A
655 661Right-handed alpha
Helix 27
AC9
A
662 670Right-handed alpha
Helix 28
AD1
A
682 693Right-handed alpha
Helix 29
AD2
A
707 714Right-handed alpha
Helix 30
AD3
A
724 730Right-handed alpha
Helix 31
AD4
A
740 781Right-handed alpha
Helix 32
AD5
A
788 798Right-handed alpha
Helix 33
AD6
A
800 807Right-handed alpha
Helix 34
AD7
A
808 810Right-handed 310
Helix 35
AD8
A
831 857Right-handed alpha
Helix 36
AD9
A
866 871Right-handed alpha
Helix 37
AE1
A
872 876Right-handed 310
Helix 38
AE2
A
887 892Right-handed 310
Helix 39
AE3
A
893 914Right-handed alpha
Helix 40
AE4
A
915 917Right-handed 310
Helix 41
AE5
A
930 950Right-handed alpha
Helix 42
AE6
A
963 975Right-handed alpha
Helix 43
AE7
A
975 991Right-handed alpha
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There are 7 sheets in PDB entry 4YCL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 141first strand
Strand 2
A
126 129anti-parallel
Strand 3
A
150 153anti-parallel
Strand 4
A
219 225anti-parallel
Strand 5
A
162 168anti-parallel
Strand 6
A
207 208anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 188first strand
Strand 2
A
174 176anti-parallel
Strand 3
A
213 216anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 333first strand
Strand 2
A
733 735anti-parallel
Strand 3
A
718 720parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
652 654first strand
Strand 2
A
675 677parallel
Strand 3
A
620 625parallel
Strand 4
A
347 351parallel
Strand 5
A
698 700parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 401first strand
Strand 2
A
395 397anti-parallel
Strand 3
A
376 384anti-parallel
Strand 4
A
362 373anti-parallel
Strand 5
A
591 600anti-parallel
Strand 6
A
560 567anti-parallel
Strand 7
A
511 516anti-parallel
Strand 8
A
493 500anti-parallel
Strand 9
A
479 485anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 401first strand
Strand 2
A
395 397anti-parallel
Strand 3
A
376 384anti-parallel
Strand 4
A
362 373anti-parallel
Strand 5
A
591 600anti-parallel
Strand 6
A
525 530parallel
Strand 7
A
533 536anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
424 427first strand
Strand 2
A
434 437anti-parallel
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