Analysis of interatomic Contacts of Structural Units in PDB entry:
4YJ1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YJ1 entry

There is 1 chain in PDB entry 4YJ1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 50THR 665
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 4YJ1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
52 61Right-handed alpha
Helix 2
AA2
A
65 73Right-handed 310
Helix 3
AA3
A
110 116Right-handed alpha
Helix 4
AA4
A
119 123Right-handed 310
Helix 5
AA5
A
124 145Right-handed alpha
Helix 6
AA6
A
202 213Right-handed alpha
Helix 7
AA7
A
213 222Right-handed alpha
Helix 8
AA8
A
226 247Right-handed alpha
Helix 9
AA9
A
248 251Right-handed 310
Helix 10
AB1
A
283 285Right-handed 310
Helix 11
AB2
A
318 328Right-handed alpha
Helix 12
AB3
A
329 331Right-handed 310
Helix 13
AB4
A
334 338Right-handed 310
Helix 14
AB5
A
371 375Right-handed 310
Helix 15
AB6
A
386 401Right-handed alpha
Helix 16
AB7
A
411 413Right-handed 310
Helix 17
AB8
A
414 419Right-handed alpha
Helix 18
AB9
A
421 428Right-handed alpha
Helix 19
AC1
A
429 433Right-handed 310
Helix 20
AC2
A
437 440Right-handed 310
Helix 21
AC3
A
441 450Right-handed alpha
Helix 22
AC4
A
481 491Right-handed alpha
Helix 23
AC5
A
516 526Right-handed alpha
Helix 24
AC6
A
560 578Right-handed alpha
Helix 25
AC7
A
580 592Right-handed alpha
Helix 26
AC8
A
611 627Right-handed alpha
Helix 27
AC9
A
647 658Right-handed alpha
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There are 9 sheets in PDB entry 4YJ1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 80first strand
Strand 2
A
83 87anti-parallel
Strand 3
A
99 106anti-parallel
Strand 4
A
184 192anti-parallel
Strand 5
A
155 156anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 80first strand
Strand 2
A
83 87anti-parallel
Strand 3
A
99 106anti-parallel
Strand 4
A
184 192anti-parallel
Strand 5
A
170 174anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 197first strand
Strand 2
A
200 201anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 292first strand
Strand 2
A
297 304anti-parallel
Strand 3
A
254 257anti-parallel
Strand 4
A
342 344anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
349 351first strand
Strand 2
A
405 409parallel
Strand 3
A
452 456parallel
Strand 4
A
308 313parallel
Strand 5
A
469 474parallel
Strand 6
A
477 480anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 362first strand
Strand 2
A
380 382anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
514 515first strand
Strand 2
A
663 664anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
535 538first strand
Strand 2
A
542 545anti-parallel
Strand 3
A
548 551anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
594 596first strand
Strand 2
A
602 604anti-parallel
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