Analysis of interatomic Contacts of Structural Units in PDB entry:
4YOZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YOZ entry

There are 2 chains in PDB entry 4YOZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLU 389PRO 967
B
ASP 21ASN 29
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 4YOZ. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
391 401Right-handed alpha
Helix 2
AA2
A
409 418Right-handed alpha
Helix 3
AA3
A
423 443Right-handed alpha
Helix 4
AA4
A
453 478Right-handed alpha
Helix 5
AA5
A
479 484Right-handed alpha
Helix 6
AA6
A
488 493Right-handed alpha
Helix 7
AA7
A
494 513Right-handed alpha
Helix 8
AA8
A
520 526Right-handed alpha
Helix 9
AA9
A
529 534Right-handed alpha
Helix 10
AB1
A
534 544Right-handed alpha
Helix 11
AB2
A
548 565Right-handed alpha
Helix 12
AB3
A
566 569Right-handed 310
Helix 13
AB4
A
572 581Right-handed alpha
Helix 14
AB5
A
587 592Right-handed alpha
Helix 15
AB6
A
784 810Right-handed alpha
Helix 16
AB7
A
813 831Right-handed alpha
Helix 17
AB8
A
832 836Right-handed 310
Helix 18
AB9
A
839 855Right-handed alpha
Helix 19
AC1
A
860 869Right-handed alpha
Helix 20
AC2
A
876 881Right-handed alpha
Helix 21
AC3
A
929 937Right-handed alpha
Helix 22
AC4
A
937 947Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 4YOZ.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
882 883first strand
Strand 2
A
927 928anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il