Analysis of interatomic Contacts of Structural Units in PDB entry:
4YS3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YS3 entry

There are 14 chains in PDB entry 4YS3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PRO 438ALA 514
A
ARG 516PRO 521
A
ASP 523ALA 535
B
ASP 24GLY 102
C
ALA 814THR 920
D
ARG 1230LYS 1322
E
PRO 638ALA 714
E
ARG 716PRO 721
E
ASP 723ALA 735
F
ASP 224GLY 302
G
ALA 1014LYS 1119
H
ARG 1430LYS 1522
I
A 1 T 147
J
A 148 T 294
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 4YS3. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
444 455Right-handed alpha
Helix 2
AA2
A
463 477Right-handed alpha
Helix 3
AA3
A
485 514Right-handed alpha
Helix 4
AA4
A
520 531Right-handed alpha
Helix 5
AA5
B
25 29Right-handed 310
Helix 6
AA6
B
30 41Right-handed alpha
Helix 7
AA7
B
49 76Right-handed alpha
Helix 8
AA8
B
82 93Right-handed alpha
Helix 9
AA9
C
816 822Right-handed alpha
Helix 10
AB1
C
826 838Right-handed alpha
Helix 11
AB2
C
845 872Right-handed alpha
Helix 12
AB3
C
879 890Right-handed alpha
Helix 13
AB4
C
890 897Right-handed alpha
Helix 14
AB5
C
912 916Right-handed 310
Helix 15
AB6
D
1234 1246Right-handed alpha
Helix 16
AB7
D
1252 1280Right-handed alpha
Helix 17
AB8
D
1287 1299Right-handed alpha
Helix 18
AB9
D
1300 1320Right-handed alpha
Helix 19
AC1
E
644 656Right-handed alpha
Helix 20
AC2
E
663 677Right-handed alpha
Helix 21
AC3
E
685 714Right-handed alpha
Helix 22
AC4
E
720 731Right-handed alpha
Helix 23
AC5
F
224 229Right-handed 310
Helix 24
AC6
F
230 241Right-handed alpha
Helix 25
AC7
F
249 276Right-handed alpha
Helix 26
AC8
F
282 293Right-handed alpha
Helix 27
AC9
G
1016 1021Right-handed alpha
Helix 28
AD1
G
1026 1037Right-handed alpha
Helix 29
AD2
G
1045 1072Right-handed alpha
Helix 30
AD3
G
1079 1089Right-handed alpha
Helix 31
AD4
G
1090 1097Right-handed alpha
Helix 32
AD5
G
1112 1116Right-handed 310
Helix 33
AD6
H
1434 1446Right-handed alpha
Helix 34
AD7
H
1452 1481Right-handed alpha
Helix 35
AD8
H
1487 1499Right-handed alpha
Helix 36
AD9
H
1500 1520Right-handed alpha
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There are 10 sheets in PDB entry 4YS3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
483 484first strand
Strand 2
B
80 81parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
518 519first strand
Strand 2
B
45 46parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
97 98first strand
Strand 2
G
1101 1102parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
842 843first strand
Strand 2
D
1285 1286parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
877 878first strand
Strand 2
D
1250 1251parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
901 902first strand
Strand 2
F
297 298parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
683 684first strand
Strand 2
F
280 281parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
718 719first strand
Strand 2
F
245 246parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
1042 1043first strand
Strand 2
H
1485 1486parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
1077 1078first strand
Strand 2
H
1450 1451parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il