Analysis of interatomic Contacts of Structural Units in PDB entry:
4YVE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YVE entry

There are 2 chains in PDB entry 4YVE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 6TYR 405
B
 MET 5ASN 402
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 4YVE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 17Right-handed alpha
Helix 2
AA2
A
26 42Right-handed alpha
Helix 3
AA3
A
43 48Right-handed alpha
Helix 4
AA4
A
49 70Right-handed alpha
Helix 5
AA5
A
72 74Right-handed 310
Helix 6
AA6
A
109 114Right-handed alpha
Helix 7
AA7
A
120 131Right-handed alpha
Helix 8
AA8
A
161 166Right-handed alpha
Helix 9
AA9
A
171 192Right-handed alpha
Helix 10
AB1
A
200 202Right-handed 310
Helix 11
AB2
A
216 220Right-handed 310
Helix 12
AB3
A
242 248Right-handed alpha
Helix 13
AB4
A
257 274Right-handed alpha
Helix 14
AB5
A
282 292Right-handed alpha
Helix 15
AB6
A
292 297Right-handed alpha
Helix 16
AB7
A
306 317Right-handed alpha
Helix 17
AB8
A
319 323Right-handed 310
Helix 18
AB9
A
328 334Right-handed alpha
Helix 19
AC1
A
335 339Right-handed 310
Helix 20
AC2
A
344 351Right-handed 310
Helix 21
AC3
A
391 395Right-handed 310
Helix 22
AC4
B
6 17Right-handed alpha
Helix 23
AC5
B
26 42Right-handed alpha
Helix 24
AC6
B
43 48Right-handed alpha
Helix 25
AC7
B
49 70Right-handed alpha
Helix 26
AC8
B
72 74Right-handed 310
Helix 27
AC9
B
109 115Right-handed alpha
Helix 28
AD1
B
120 131Right-handed alpha
Helix 29
AD2
B
161 166Right-handed alpha
Helix 30
AD3
B
171 192Right-handed alpha
Helix 31
AD4
B
200 202Right-handed 310
Helix 32
AD5
B
237 241Right-handed 310
Helix 33
AD6
B
242 248Right-handed alpha
Helix 34
AD7
B
257 274Right-handed alpha
Helix 35
AD8
B
282 292Right-handed alpha
Helix 36
AD9
B
292 297Right-handed alpha
Helix 37
AE1
B
306 317Right-handed alpha
Helix 38
AE2
B
319 323Right-handed 310
Helix 39
AE3
B
328 334Right-handed alpha
Helix 40
AE4
B
335 339Right-handed 310
Helix 41
AE5
B
344 351Right-handed 310
Helix 42
AE6
B
391 395Right-handed 310
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There are 8 sheets in PDB entry 4YVE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 84first strand
Strand 2
A
88 95anti-parallel
Strand 3
A
101 108anti-parallel
Strand 4
A
148 153anti-parallel
Strand 5
A
139 144anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 160first strand
Strand 2
A
204 206anti-parallel
Strand 3
A
212 214anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 195first strand
Strand 2
A
221 222anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 230first strand
Strand 2
A
254 256anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 85first strand
Strand 2
B
88 95anti-parallel
Strand 3
B
101 108anti-parallel
Strand 4
B
148 153anti-parallel
Strand 5
B
139 144anti-parallel
Strand 6
B
399 400anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
159 160first strand
Strand 2
B
204 206anti-parallel
Strand 3
B
212 214anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 195first strand
Strand 2
B
221 222anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
228 230first strand
Strand 2
B
254 256anti-parallel
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