Analysis of interatomic Contacts of Structural Units in PDB entry:
4YZW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YZW entry

There are 2 chains in PDB entry 4YZW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 697
B
 THR 3ARG 697
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 69 helices in PDB entry 4YZW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 10Right-handed alpha
Helix 2
AA2
A
33 37Right-handed 310
Helix 3
AA3
A
41 43Right-handed 310
Helix 4
AA4
A
44 53Right-handed alpha
Helix 5
AA5
A
100 116Right-handed alpha
Helix 6
AA6
A
119 132Right-handed alpha
Helix 7
AA7
A
135 150Right-handed alpha
Helix 8
AA8
A
151 154Right-handed 310
Helix 9
AA9
A
160 164Right-handed 310
Helix 10
AB1
A
165 169Right-handed 310
Helix 11
AB2
A
171 185Right-handed alpha
Helix 12
AB3
A
186 190Right-handed 310
Helix 13
AB4
A
205 209Right-handed 310
Helix 14
AB5
A
210 215Right-handed alpha
Helix 15
AB6
A
216 230Right-handed alpha
Helix 16
AB7
A
235 240Right-handed alpha
Helix 17
AB8
A
243 266Right-handed alpha
Helix 18
AB9
A
313 316Right-handed 310
Helix 19
AC1
A
320 338Right-handed alpha
Helix 20
AC2
A
354 365Right-handed alpha
Helix 21
AC3
A
371 376Right-handed alpha
Helix 22
AC4
A
377 388Right-handed alpha
Helix 23
AC5
A
401 405Right-handed 310
Helix 24
AC6
A
408 412Right-handed 310
Helix 25
AC7
A
413 431Right-handed alpha
Helix 26
AC8
A
437 442Right-handed alpha
Helix 27
AC9
A
477 480Right-handed 310
Helix 28
AD1
A
534 541Right-handed alpha
Helix 29
AD2
A
564 566Right-handed 310
Helix 30
AD3
A
571 577Right-handed alpha
Helix 31
AD4
A
599 601Right-handed 310
Helix 32
AD5
A
620 625Right-handed alpha
Helix 33
AD6
A
639 644Right-handed alpha
Helix 34
AD7
A
670 676Right-handed alpha
Helix 35
AD8
B
4 10Right-handed alpha
Helix 36
AD9
B
33 37Right-handed 310
Helix 37
AE1
B
41 43Right-handed 310
Helix 38
AE2
B
44 53Right-handed alpha
Helix 39
AE3
B
84 89Right-handed alpha
Helix 40
AE4
B
100 116Right-handed alpha
Helix 41
AE5
B
119 132Right-handed alpha
Helix 42
AE6
B
135 150Right-handed alpha
Helix 43
AE7
B
151 154Right-handed 310
Helix 44
AE8
B
160 164Right-handed 310
Helix 45
AE9
B
165 169Right-handed 310
Helix 46
AF1
B
171 185Right-handed alpha
Helix 47
AF2
B
186 190Right-handed 310
Helix 48
AF3
B
205 209Right-handed 310
Helix 49
AF4
B
210 215Right-handed alpha
Helix 50
AF5
B
216 230Right-handed alpha
Helix 51
AF6
B
235 240Right-handed alpha
Helix 52
AF7
B
243 266Right-handed alpha
Helix 53
AF8
B
313 316Right-handed 310
Helix 54
AF9
B
320 338Right-handed alpha
Helix 55
AG1
B
354 365Right-handed alpha
Helix 56
AG2
B
371 376Right-handed alpha
Helix 57
AG3
B
377 388Right-handed alpha
Helix 58
AG4
B
401 405Right-handed 310
Helix 59
AG5
B
408 412Right-handed 310
Helix 60
AG6
B
413 431Right-handed alpha
Helix 61
AG7
B
437 442Right-handed alpha
Helix 62
AG8
B
477 480Right-handed 310
Helix 63
AG9
B
534 541Right-handed alpha
Helix 64
AH1
B
564 566Right-handed 310
Helix 65
AH2
B
571 577Right-handed alpha
Helix 66
AH3
B
599 601Right-handed 310
Helix 67
AH4
B
620 625Right-handed alpha
Helix 68
AH5
B
639 644Right-handed alpha
Helix 69
AH6
B
670 676Right-handed alpha
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There are 13 sheets in PDB entry 4YZW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 31first strand
Strand 2
A
71 74parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 194first strand
Strand 2
A
489 497parallel
Strand 3
A
464 475anti-parallel
Strand 4
A
681 696parallel
Strand 5
A
610 619anti-parallel
Strand 6
A
514 524anti-parallel
Strand 7
A
543 552anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 312first strand
Strand 2
A
317 319anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 341first strand
Strand 2
A
347 349anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
446 455first strand
Strand 2
A
500 508anti-parallel
Strand 3
A
555 562anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
569 570first strand
Strand 2
A
596 597parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 31first strand
Strand 2
B
71 74parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 194first strand
Strand 2
B
489 497parallel
Strand 3
B
464 475anti-parallel
Strand 4
B
681 696parallel
Strand 5
B
610 619anti-parallel
Strand 6
B
514 524anti-parallel
Strand 7
B
543 552anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
290 291first strand
Strand 2
B
296 297anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
310 312first strand
Strand 2
B
317 319anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
339 341first strand
Strand 2
B
347 349anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
446 455first strand
Strand 2
B
500 508anti-parallel
Strand 3
B
555 562anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
569 570first strand
Strand 2
B
596 597parallel
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