Analysis of interatomic Contacts of Structural Units in PDB entry:
4Z8L

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4Z8L entry

There are 6 chains in PDB entry 4Z8L (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 1073	GLY 1390
B	GLU 10	CYS 88
C	GLN 2	SER 107
D	ARG 1073	GLY 1390
E	GLU 10	CYS 88
F	GLN 2	GLN 109

There are 20 helices in PDB entry 4Z8L. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1075	1079	Right-handed 310
Helix 2	AA2	A	1292	1295	Right-handed 310
Helix 3	AA3	B	20	36	Right-handed alpha
Helix 4	AA4	B	44	55	Right-handed alpha
Helix 5	AA5	B	62	85	Right-handed alpha
Helix 6	AA6	C	14	18	Right-handed 310
Helix 7	AA7	C	46	57	Right-handed alpha
Helix 8	AA8	C	61	66	Right-handed alpha
Helix 9	AA9	C	93	98	Right-handed alpha
Helix 10	AB1	D	1075	1079	Right-handed 310
Helix 11	AB2	D	1292	1295	Right-handed 310
Helix 12	AB3	E	20	36	Right-handed alpha
Helix 13	AB4	E	43	55	Right-handed alpha
Helix 14	AB5	E	62	85	Right-handed alpha
Helix 15	AB6	F	14	18	Right-handed 310
Helix 16	AB7	F	46	57	Right-handed alpha
Helix 17	AB8	F	64	68	Right-handed 310
Helix 18	AB9	F	82	88	Right-handed alpha
Helix 19	AC1	F	93	101	Right-handed alpha
Helix 20	AC2	F	101	106	Right-handed alpha

There are 14 sheets in PDB entry 4Z8L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1081	1086	first strand
Strand 2	A	1383	1388	anti-parallel
Strand 3	A	1365	1371	anti-parallel
Strand 4	A	1353	1359	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1096	1101	first strand
Strand 2	A	1107	1112	anti-parallel
Strand 3	A	1116	1121	anti-parallel
Strand 4	A	1127	1132	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1140	1143	first strand
Strand 2	A	1149	1153	anti-parallel
Strand 3	A	1161	1165	anti-parallel
Strand 4	A	1171	1176	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1181	1184	first strand
Strand 2	A	1191	1196	anti-parallel
Strand 3	A	1199	1204	anti-parallel
Strand 4	A	1210	1214	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1229	1230	first strand
Strand 2	A	1236	1239	anti-parallel
Strand 3	A	1242	1245	anti-parallel
Strand 4	A	1250	1254	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1265	1266	first strand
Strand 2	A	1272	1275	anti-parallel
Strand 3	A	1278	1281	anti-parallel
Strand 4	A	1287	1290	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1297	1301	first strand
Strand 2	A	1307	1313	anti-parallel
Strand 3	A	1330	1338	anti-parallel
Strand 4	A	1344	1349	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1081	1086	first strand
Strand 2	D	1382	1388	anti-parallel
Strand 3	D	1365	1371	anti-parallel
Strand 4	D	1353	1359	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1096	1101	first strand
Strand 2	D	1107	1112	anti-parallel
Strand 3	D	1116	1121	anti-parallel
Strand 4	D	1127	1132	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1140	1143	first strand
Strand 2	D	1149	1153	anti-parallel
Strand 3	D	1161	1165	anti-parallel
Strand 4	D	1171	1176	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1181	1184	first strand
Strand 2	D	1191	1196	anti-parallel
Strand 3	D	1199	1204	anti-parallel
Strand 4	D	1210	1214	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1229	1230	first strand
Strand 2	D	1236	1239	anti-parallel
Strand 3	D	1242	1245	anti-parallel
Strand 4	D	1250	1254	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1265	1266	first strand
Strand 2	D	1272	1275	anti-parallel
Strand 3	D	1278	1281	anti-parallel
Strand 4	D	1287	1290	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1297	1301	first strand
Strand 2	D	1307	1313	anti-parallel
Strand 3	D	1330	1338	anti-parallel
Strand 4	D	1344	1349	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4Z8L

Analysis of interatomic Contacts of Structural Units in PDB entry:
4Z8L