Analysis of interatomic Contacts of Structural Units in PDB entry:
4ZTM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4ZTM entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 12 chains in PDB entry 4ZTM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASP 162GLN 341
A
VAL 343MET 344
A
ARG 347ALA 459
B
SER 161GLN 341
B
VAL 343MET 344
B
ARG 347ALA 459
C
ARG 164GLU 337
C
VAL 343MET 344
C
ARG 347SER 460
D
ARG 164SER 336
D
VAL 343MET 344
D
ARG 347ALA 459
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 4ZTM. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
169 177Right-handed alpha
Helix 2
AA2
A
223 240Right-handed alpha
Helix 3
AA3
A
269 275Right-handed alpha
Helix 4
AA4
A
276 280Right-handed 310
Helix 5
AA5
A
284 305Right-handed alpha
Helix 6
AA6
A
313 315Right-handed 310
Helix 7
AA7
A
356 361Right-handed alpha
Helix 8
AA8
A
366 383Right-handed alpha
Helix 9
AA9
A
395 397Right-handed 310
Helix 10
AB1
A
398 405Right-handed alpha
Helix 11
AB2
A
409 413Right-handed 310
Helix 12
AB3
A
422 437Right-handed alpha
Helix 13
AB4
A
440 444Right-handed 310
Helix 14
AB5
A
446 459Right-handed alpha
Helix 15
AB6
B
169 177Right-handed alpha
Helix 16
AB7
B
227 240Right-handed alpha
Helix 17
AB8
B
269 275Right-handed alpha
Helix 18
AB9
B
276 280Right-handed 310
Helix 19
AC1
B
284 305Right-handed alpha
Helix 20
AC2
B
356 361Right-handed alpha
Helix 21
AC3
B
366 383Right-handed alpha
Helix 22
AC4
B
395 397Right-handed 310
Helix 23
AC5
B
398 405Right-handed alpha
Helix 24
AC6
B
409 413Right-handed 310
Helix 25
AC7
B
422 437Right-handed alpha
Helix 26
AC8
B
446 459Right-handed alpha
Helix 27
AC9
C
169 178Right-handed alpha
Helix 28
AD1
C
222 240Right-handed alpha
Helix 29
AD2
C
269 275Right-handed alpha
Helix 30
AD3
C
276 280Right-handed 310
Helix 31
AD4
C
284 305Right-handed alpha
Helix 32
AD5
C
356 361Right-handed alpha
Helix 33
AD6
C
366 383Right-handed alpha
Helix 34
AD7
C
395 397Right-handed 310
Helix 35
AD8
C
398 405Right-handed alpha
Helix 36
AD9
C
409 413Right-handed 310
Helix 37
AE1
C
422 437Right-handed alpha
Helix 38
AE2
C
440 444Right-handed 310
Helix 39
AE3
C
446 460Right-handed alpha
Helix 40
AE4
D
169 177Right-handed alpha
Helix 41
AE5
D
184 188Right-handed 310
Helix 42
AE6
D
223 240Right-handed alpha
Helix 43
AE7
D
269 275Right-handed alpha
Helix 44
AE8
D
276 280Right-handed 310
Helix 45
AE9
D
284 305Right-handed alpha
Helix 46
AF1
D
313 315Right-handed 310
Helix 47
AF2
D
356 361Right-handed alpha
Helix 48
AF3
D
366 383Right-handed alpha
Helix 49
AF4
D
395 397Right-handed 310
Helix 50
AF5
D
398 405Right-handed alpha
Helix 51
AF6
D
409 413Right-handed 310
Helix 52
AF7
D
422 437Right-handed alpha
Helix 53
AF8
D
440 444Right-handed 310
Helix 54
AF9
D
446 459Right-handed alpha
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There are 15 sheets in PDB entry 4ZTM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
166 167first strand
Strand 2
A
248 252parallel
Strand 3
A
259 263anti-parallel
Strand 4
A
208 215anti-parallel
Strand 5
A
198 205anti-parallel
Strand 6
A
191 194anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
307 308first strand
Strand 2
A
334 335anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
317 319first strand
Strand 2
A
325 327anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
343 344first strand
Strand 2
A
363 364anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
166 167first strand
Strand 2
B
248 252parallel
Strand 3
B
259 263anti-parallel
Strand 4
B
208 214anti-parallel
Strand 5
B
199 205anti-parallel
Strand 6
B
191 193anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
317 319first strand
Strand 2
B
325 327anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
343 344first strand
Strand 2
B
363 364anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
166 167first strand
Strand 2
C
248 252parallel
Strand 3
C
259 263anti-parallel
Strand 4
C
208 214anti-parallel
Strand 5
C
199 205anti-parallel
Strand 6
C
191 194anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
307 308first strand
Strand 2
C
334 335anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
317 319first strand
Strand 2
C
325 327anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
343 344first strand
Strand 2
C
363 364anti-parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
166 167first strand
Strand 2
D
248 252parallel
Strand 3
D
259 263anti-parallel
Strand 4
D
208 215anti-parallel
Strand 5
D
198 205anti-parallel
Strand 6
D
191 194anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
307 308first strand
Strand 2
D
334 335anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
317 319first strand
Strand 2
D
325 327anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
343 344first strand
Strand 2
D
363 364anti-parallel
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