Analysis of interatomic Contacts of Structural Units in PDB entry:
4ZVQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4ZVQ entry

There are 6 chains in PDB entry 4ZVQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 58GLN 196
B
 TYR 211GLN 303
C
 THR 357GLN 496
D
 TYR 511GLN 603
E
 VAL 1ILE 3
F
 VAL 1ILE 3
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 4ZVQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
79 83Right-handed 310
Helix 2
AA2
A
89 105Right-handed alpha
Helix 3
AA3
A
115 129Right-handed alpha
Helix 4
AA4
A
159 164Right-handed alpha
Helix 5
AA5
A
165 167Right-handed 310
Helix 6
AA6
A
171 175Right-handed 310
Helix 7
AA7
B
240 253Right-handed alpha
Helix 8
AA8
B
257 273Right-handed alpha
Helix 9
AA9
B
279 283Right-handed 310
Helix 10
AB1
C
379 383Right-handed 310
Helix 11
AB2
C
389 405Right-handed alpha
Helix 12
AB3
C
415 429Right-handed alpha
Helix 13
AB4
C
459 464Right-handed alpha
Helix 14
AB5
C
465 467Right-handed 310
Helix 15
AB6
C
471 475Right-handed 310
Helix 16
AB7
D
540 553Right-handed alpha
Helix 17
AB8
D
557 573Right-handed alpha
Helix 18
AB9
D
579 583Right-handed 310
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There are 7 sheets in PDB entry 4ZVQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 112first strand
Strand 2
A
66 74parallel
Strand 3
A
134 142parallel
Strand 4
A
179 184parallel
Strand 5
B
219 223parallel
Strand 6
B
290 293anti-parallel
Strand 7
D
590 593anti-parallel
Strand 8
D
519 523anti-parallel
Strand 9
C
479 484parallel
Strand 10
C
434 442parallel
Strand 11
C
366 374parallel
Strand 12
C
406 412parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 146first strand
Strand 2
A
149 152anti-parallel
Strand 3
A
155 158anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 190first strand
Strand 2
B
228 229parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
238 239first strand
Strand 2
B
232 234anti-parallel
Strand 3
E
2 3anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
445 446first strand
Strand 2
C
449 452anti-parallel
Strand 3
C
455 458anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
488 490first strand
Strand 2
D
528 529parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
538 539first strand
Strand 2
D
532 534anti-parallel
Strand 3
F
2 3anti-parallel
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