Analysis of interatomic Contacts of Structural Units in PDB entry:
4ZZJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4ZZJ entry

There are 4 chains in PDB entry 4ZZJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 183ASP 660
B
 ARG 1LYS 3
B
 LEU 5LEU 5
B
 PHE 7PHE 7
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 4ZZJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
183 193Right-handed alpha
Helix 2
AA2
A
197 206Right-handed alpha
Helix 3
AA3
A
216 229Right-handed alpha
Helix 4
AA4
A
242 253Right-handed alpha
Helix 5
AA5
A
262 269Right-handed 310
Helix 6
AA6
A
279 287Right-handed alpha
Helix 7
AA7
A
292 297Right-handed 310
Helix 8
AA8
A
298 305Right-handed alpha
Helix 9
AA9
A
306 317Right-handed alpha
Helix 10
AB1
A
324 336Right-handed alpha
Helix 11
AB2
A
349 355Right-handed alpha
Helix 12
AB3
A
380 389Right-handed alpha
Helix 13
AB4
A
419 430Right-handed alpha
Helix 14
AB5
A
447 449Right-handed 310
Helix 15
AB6
A
450 455Right-handed alpha
Helix 16
AB7
A
481 494Right-handed alpha
Helix 17
AB8
A
494 499Right-handed alpha
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There are 3 sheets in PDB entry 4ZZJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 361first strand
Strand 2
A
339 344parallel
Strand 3
A
256 260parallel
Strand 4
A
435 439parallel
Strand 5
A
461 465parallel
Strand 6
A
476 479parallel
Strand 7
A
649 651parallel
Strand 8
A
643 645anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
377 379first strand
Strand 2
A
364 371anti-parallel
Strand 3
A
407 411anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
445 446first strand
Strand 2
B
5 6anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il