Analysis of interatomic Contacts of Structural Units in PDB entry:
5A12


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5A12 entry

There are 5 chains in PDB entry 5A12 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 8MET 249
B
 MET 8MET 249
C
 MET 8MET 249
D
 MET 8MET 249
E
 MET 8MET 249
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 5A12. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 17Right-handed alpha
Helix 2
2
A
31 36Right-handed 310
Helix 3
3
A
37 43Right-handed alpha
Helix 4
4
A
43 55Right-handed alpha
Helix 5
5
A
83 97Right-handed alpha
Helix 6
6
A
97 102Right-handed alpha
Helix 7
7
A
124 134Right-handed alpha
Helix 8
8
A
152 158Right-handed alpha
Helix 9
9
A
159 172Right-handed alpha
Helix 10
10
A
174 179Right-handed 310
Helix 11
11
A
204 217Right-handed alpha
Helix 12
12
A
218 222Right-handed 310
Helix 13
13
A
238 247Right-handed alpha
Helix 14
14
B
10 17Right-handed alpha
Helix 15
15
B
32 36Right-handed 310
Helix 16
16
B
37 43Right-handed alpha
Helix 17
17
B
43 55Right-handed alpha
Helix 18
18
B
83 97Right-handed alpha
Helix 19
19
B
97 102Right-handed alpha
Helix 20
20
B
124 134Right-handed alpha
Helix 21
21
B
152 158Right-handed alpha
Helix 22
22
B
159 172Right-handed alpha
Helix 23
23
B
174 179Right-handed 310
Helix 24
24
B
204 217Right-handed alpha
Helix 25
25
B
218 222Right-handed 310
Helix 26
26
B
238 248Right-handed alpha
Helix 27
27
C
10 17Right-handed alpha
Helix 28
28
C
31 34Right-handed 310
Helix 29
29
C
37 43Right-handed alpha
Helix 30
30
C
43 55Right-handed alpha
Helix 31
31
C
83 97Right-handed alpha
Helix 32
32
C
97 102Right-handed alpha
Helix 33
33
C
124 134Right-handed alpha
Helix 34
34
C
152 158Right-handed alpha
Helix 35
35
C
159 172Right-handed alpha
Helix 36
36
C
174 179Right-handed 310
Helix 37
37
C
204 217Right-handed alpha
Helix 38
38
C
218 222Right-handed 310
Helix 39
39
C
238 247Right-handed alpha
Helix 40
40
D
10 17Right-handed alpha
Helix 41
41
D
32 36Right-handed 310
Helix 42
42
D
37 43Right-handed alpha
Helix 43
43
D
43 55Right-handed alpha
Helix 44
44
D
83 96Right-handed alpha
Helix 45
45
D
97 102Right-handed alpha
Helix 46
46
D
124 134Right-handed alpha
Helix 47
47
D
152 158Right-handed alpha
Helix 48
48
D
159 172Right-handed alpha
Helix 49
49
D
174 179Right-handed 310
Helix 50
50
D
204 217Right-handed alpha
Helix 51
51
D
218 222Right-handed 310
Helix 52
52
D
238 247Right-handed alpha
Helix 53
53
E
10 17Right-handed alpha
Helix 54
54
E
31 36Right-handed 310
Helix 55
55
E
37 55Right-handed alpha
Helix 56
56
E
83 97Right-handed alpha
Helix 57
57
E
97 102Right-handed alpha
Helix 58
58
E
124 134Right-handed alpha
Helix 59
59
E
152 158Right-handed alpha
Helix 60
60
E
159 172Right-handed alpha
Helix 61
61
E
174 179Right-handed 310
Helix 62
62
E
204 217Right-handed alpha
Helix 63
63
E
218 222Right-handed 310
Helix 64
64
E
238 247Right-handed alpha
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There are 5 sheets in PDB entry 5A12. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A, EA,

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 29first strand
Strand 2
A
75 81anti-parallel
Strand 3
A
60 65anti-parallel
Strand 4
A
232 237anti-parallel
Strand 5
A
143 151parallel
Strand 6
A
196 202anti-parallel
Strand 7
A
181 187anti-parallel
Strand 8
A
103 112anti-parallel
Strand 9
A
21 29first strand
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There are 9 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 29first strand
Strand 2
B
75 81anti-parallel
Strand 3
B
60 65anti-parallel
Strand 4
B
232 237anti-parallel
Strand 5
B
143 151parallel
Strand 6
B
196 202anti-parallel
Strand 7
B
181 187anti-parallel
Strand 8
B
103 112anti-parallel
Strand 9
B
21 29first strand
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There are 9 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
21 29first strand
Strand 2
C
75 81anti-parallel
Strand 3
C
60 65anti-parallel
Strand 4
C
232 237anti-parallel
Strand 5
C
143 151parallel
Strand 6
C
196 202anti-parallel
Strand 7
C
181 187anti-parallel
Strand 8
C
103 112anti-parallel
Strand 9
C
21 29first strand
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There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
21 29first strand
Strand 2
D
75 81anti-parallel
Strand 3
D
60 65anti-parallel
Strand 4
D
232 237anti-parallel
Strand 5
D
143 151parallel
Strand 6
D
196 202anti-parallel
Strand 7
D
181 187anti-parallel
Strand 8
D
103 112anti-parallel
Strand 9
D
21 29first strand
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There are 9 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
21 29first strand
Strand 2
E
75 81anti-parallel
Strand 3
E
60 65anti-parallel
Strand 4
E
232 237anti-parallel
Strand 5
E
143 151parallel
Strand 6
E
196 202anti-parallel
Strand 7
E
181 187anti-parallel
Strand 8
E
103 112anti-parallel
Strand 9
E
21 29first strand
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il