Analysis of interatomic Contacts of Structural Units in PDB entry:
5A19


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5A19 entry

There is 1 chain in PDB entry 5A19 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 16TYR 395
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5A19. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
29 49Right-handed alpha
Helix 2
2
A
78 91Right-handed alpha
Helix 3
3
A
95 98Right-handed 310
Helix 4
4
A
151 170Right-handed alpha
Helix 5
5
A
214 225Right-handed alpha
Helix 6
6
A
226 231Right-handed alpha
Helix 7
7
A
232 236Right-handed 310
Helix 8
8
A
253 258Right-handed alpha
Helix 9
9
A
289 308Right-handed alpha
Helix 10
10
A
341 353Right-handed alpha
Helix 11
11
A
356 365Right-handed alpha
Helix 12
12
A
371 375Right-handed 310
Helix 13
13
A
385 389Right-handed 310
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There are 4 sheets in PDB entry 5A19. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 25first strand
Strand 2
A
176 191anti-parallel
Strand 3
A
194 209anti-parallel
Strand 4
A
241 244parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 113first strand
Strand 2
A
64 72parallel
Strand 3
A
53 61anti-parallel
Strand 4
A
260 261anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 94first strand
Strand 2
A
99 100anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 143first strand
Strand 2
A
313 320anti-parallel
Strand 3
A
329 333anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il