Analysis of interatomic Contacts of Structural Units in PDB entry:
5A29


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5A29 entry

There are 2 chains in PDB entry 5A29 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 19ARG 566
B
 HIS 0ALA 17
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5A29. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 43Right-handed alpha
Helix 2
2
A
79 82Right-handed 310
Helix 3
3
A
83 98Right-handed alpha
Helix 4
4
A
100 117Right-handed alpha
Helix 5
5
A
157 165Right-handed alpha
Helix 6
6
A
165 181Right-handed alpha
Helix 7
7
A
202 206Right-handed 310
Helix 8
8
A
229 247Right-handed alpha
Helix 9
9
A
248 253Right-handed alpha
Helix 10
10
A
254 269Right-handed alpha
Helix 11
11
A
298 300Right-handed 310
Helix 12
12
A
303 314Right-handed alpha
Helix 13
13
A
315 317Right-handed 310
Helix 14
14
A
318 321Right-handed 310
Helix 15
15
A
326 333Right-handed alpha
Helix 16
16
A
333 346Right-handed alpha
Helix 17
17
A
348 367Right-handed alpha
Helix 18
18
A
412 423Right-handed alpha
Helix 19
19
A
425 439Right-handed alpha
Helix 20
20
A
462 477Right-handed alpha
Helix 21
21
A
479 496Right-handed alpha
Helix 22
22
A
516 529Right-handed alpha
Helix 23
23
A
531 535Right-handed 310
Helix 24
24
A
557 561Right-handed alpha
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There are 6 sheets in PDB entry 5A29. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 58first strand
Strand 2
A
510 512anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 68first strand
Strand 2
A
74 78anti-parallel
Strand 3
A
131 133anti-parallel
Strand 4
A
139 140anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 224first strand
Strand 2
A
283 284parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
442 443first strand
Strand 2
A
453 454anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
497 498first strand
Strand 2
A
501 502anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
546 549first strand
Strand 2
A
552 556anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il