Analysis of interatomic Contacts of Structural Units in PDB entry:
5A7R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5A7R entry

There is 1 chain in PDB entry 5A7R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASP 450CYS 963
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5A7R. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
457 461Right-handed 310
Helix 2
2
A
485 489Right-handed 310
Helix 3
3
A
535 544Right-handed alpha
Helix 4
4
A
549 560Right-handed alpha
Helix 5
5
A
561 565Right-handed 310
Helix 6
6
A
570 580Right-handed alpha
Helix 7
7
A
582 592Right-handed alpha
Helix 8
8
A
592 603Right-handed alpha
Helix 9
9
A
603 608Right-handed alpha
Helix 10
10
A
627 639Right-handed alpha
Helix 11
11
A
661 666Right-handed 310
Helix 12
12
A
671 689Right-handed alpha
Helix 13
13
A
707 711Right-handed 310
Helix 14
14
A
725 730Right-handed alpha
Helix 15
15
A
744 749Right-handed 310
Helix 16
16
A
753 762Right-handed alpha
Helix 17
17
A
763 766Right-handed 310
Helix 18
18
A
767 772Right-handed alpha
Helix 19
19
A
795 799Right-handed 310
Helix 20
20
A
831 836Right-handed 310
Helix 21
21
A
837 853Right-handed alpha
Helix 22
22
A
858 862Right-handed 310
Helix 23
23
A
878 893Right-handed alpha
Helix 24
24
A
904 921Right-handed alpha
Helix 25
25
A
924 940Right-handed alpha
Helix 26
26
A
951 962Right-handed alpha
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There are 3 sheets in PDB entry 5A7R. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 10 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
453 455first strand
Strand 2
A
718 721anti-parallel
Strand 3
A
897 900parallel
Strand 4
A
865 868parallel
Strand 5
A
734 739parallel
Strand 6
A
820 825parallel
Strand 7
A
779 784anti-parallel
Strand 8
A
694 701anti-parallel
Strand 9
A
621 626anti-parallel
Strand 10
A
480 482parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
520 521first strand
Strand 2
A
533 534anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
790 793first strand
Strand 2
A
800 804anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il