Analysis of interatomic Contacts of Structural Units in PDB entry:
5AFJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AFJ entry

There are 5 chains in PDB entry 5AFJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 1GLY 204
B
 GLY 0GLY 204
C
 GLY 0GLY 204
D
 GLY 0GLY 204
E
 GLY 0GLY 204
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5AFJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 13Right-handed alpha
Helix 2
2
A
61 64Right-handed 310
Helix 3
3
A
81 83Right-handed 310
Helix 4
4
B
2 14Right-handed alpha
Helix 5
5
B
81 83Right-handed 310
Helix 6
6
C
0 14Right-handed alpha
Helix 7
7
C
61 64Right-handed 310
Helix 8
8
C
81 83Right-handed 310
Helix 9
9
D
0 13Right-handed alpha
Helix 10
10
D
81 83Right-handed 310
Helix 11
11
D
127 132Right-handed 310
Helix 12
12
E
0 13Right-handed alpha
Helix 13
13
E
66 70Right-handed 310
Helix 14
14
E
81 83Right-handed 310
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There are 15 sheets in PDB entry 5AFJ. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, CA, CB, CC, A, DB, C, EA, EB, EC,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 79first strand
Strand 2
A
104 108anti-parallel
Strand 3
A
112 115anti-parallel
Strand 4
A
47 59anti-parallel
Strand 5
A
118 124parallel
Strand 6
A
98 99parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 79first strand
Strand 2
A
104 108anti-parallel
Strand 3
A
112 115anti-parallel
Strand 4
A
47 59anti-parallel
Strand 5
A
27 42anti-parallel
Strand 6
A
152 156parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 90first strand
Strand 2
A
136 144anti-parallel
Strand 3
A
191 202anti-parallel
Strand 4
A
170 182anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 79first strand
Strand 2
B
104 108anti-parallel
Strand 3
B
110 115anti-parallel
Strand 4
B
47 64anti-parallel
Strand 5
B
118 124parallel
Strand 6
B
98 99anti-parallel
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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 79first strand
Strand 2
B
104 108anti-parallel
Strand 3
B
110 115anti-parallel
Strand 4
B
47 64anti-parallel
Strand 5
B
27 42anti-parallel
Strand 6
B
152 156parallel
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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 90first strand
Strand 2
B
136 144anti-parallel
Strand 3
B
191 202anti-parallel
Strand 4
B
170 182anti-parallel
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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
75 79first strand
Strand 2
C
104 108anti-parallel
Strand 3
C
112 115anti-parallel
Strand 4
C
47 59anti-parallel
Strand 5
C
118 124parallel
Strand 6
C
98 99parallel
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There are 6 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
75 79first strand
Strand 2
C
104 108anti-parallel
Strand 3
C
112 115anti-parallel
Strand 4
C
47 59anti-parallel
Strand 5
C
27 42anti-parallel
Strand 6
C
152 156parallel
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There are 4 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
88 90first strand
Strand 2
C
136 144anti-parallel
Strand 3
C
191 202anti-parallel
Strand 4
C
170 182anti-parallel
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There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
75 79first strand
Strand 2
D
104 108anti-parallel
Strand 3
D
110 115anti-parallel
Strand 4
D
47 64anti-parallel
Strand 5
D
118 124parallel
Strand 6
D
98 99anti-parallel
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There are 6 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
75 79first strand
Strand 2
D
104 108anti-parallel
Strand 3
D
110 115anti-parallel
Strand 4
D
47 64anti-parallel
Strand 5
D
27 42anti-parallel
Strand 6
D
152 156parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
88 90first strand
Strand 2
D
136 144anti-parallel
Strand 3
D
191 202anti-parallel
Strand 4
D
170 182anti-parallel
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There are 6 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
75 79first strand
Strand 2
E
104 108anti-parallel
Strand 3
E
110 115anti-parallel
Strand 4
E
47 64anti-parallel
Strand 5
E
118 124parallel
Strand 6
E
98 99anti-parallel
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There are 6 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
75 79first strand
Strand 2
E
104 108anti-parallel
Strand 3
E
110 115anti-parallel
Strand 4
E
47 64anti-parallel
Strand 5
E
27 42anti-parallel
Strand 6
E
152 156parallel
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There are 4 strands in EC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
88 90first strand
Strand 2
E
136 144anti-parallel
Strand 3
E
191 202anti-parallel
Strand 4
E
170 182anti-parallel
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