Analysis of interatomic Contacts of Structural Units in PDB entry:
5AII

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5AII entry

There are 16 chains in PDB entry 5AII (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	PRO 125
B	MET 1	PRO 127
C	MET 1	SER 126
D	MET 1	PRO 125
E	MET 1	PRO 125
F	MET 1	ALA 124
G	MET 1	PRO 125
H	MET 1	HIS 134
I	MET 1	PRO 125
J	MET 1	PRO 125
K	MET 1	PRO 125
L	MET 1	PRO 125
M	MET 1	PRO 125
N	MET 1	HIS 134
O	MET 1	PRO 125
P	MET 1	SER 126

There are 64 helices in PDB entry 5AII. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	2	16	Right-handed alpha
Helix 2	2	A	18	24	Right-handed alpha
Helix 3	3	A	42	52	Right-handed alpha
Helix 4	4	A	115	123	Right-handed alpha
Helix 5	5	B	2	16	Right-handed alpha
Helix 6	6	B	18	25	Right-handed alpha
Helix 7	7	B	42	52	Right-handed alpha
Helix 8	8	B	115	123	Right-handed alpha
Helix 9	9	C	2	16	Right-handed alpha
Helix 10	10	C	18	25	Right-handed alpha
Helix 11	11	C	42	52	Right-handed alpha
Helix 12	12	C	115	123	Right-handed alpha
Helix 13	13	D	2	16	Right-handed alpha
Helix 14	14	D	18	25	Right-handed alpha
Helix 15	15	D	42	52	Right-handed alpha
Helix 16	16	D	115	123	Right-handed alpha
Helix 17	17	E	2	16	Right-handed alpha
Helix 18	18	E	18	25	Right-handed alpha
Helix 19	19	E	42	52	Right-handed alpha
Helix 20	20	E	115	123	Right-handed alpha
Helix 21	21	F	2	16	Right-handed alpha
Helix 22	22	F	18	25	Right-handed alpha
Helix 23	23	F	42	52	Right-handed alpha
Helix 24	24	F	115	123	Right-handed alpha
Helix 25	25	G	2	16	Right-handed alpha
Helix 26	26	G	18	25	Right-handed alpha
Helix 27	27	G	42	52	Right-handed alpha
Helix 28	28	G	115	123	Right-handed alpha
Helix 29	29	H	2	16	Right-handed alpha
Helix 30	30	H	18	25	Right-handed alpha
Helix 31	31	H	42	52	Right-handed alpha
Helix 32	32	H	115	124	Right-handed alpha
Helix 33	33	I	2	16	Right-handed alpha
Helix 34	34	I	18	25	Right-handed alpha
Helix 35	35	I	42	52	Right-handed alpha
Helix 36	36	I	115	124	Right-handed alpha
Helix 37	37	J	2	16	Right-handed alpha
Helix 38	38	J	18	25	Right-handed alpha
Helix 39	39	J	42	52	Right-handed alpha
Helix 40	40	J	115	124	Right-handed alpha
Helix 41	41	K	2	16	Right-handed alpha
Helix 42	42	K	18	25	Right-handed alpha
Helix 43	43	K	42	51	Right-handed alpha
Helix 44	44	K	115	124	Right-handed alpha
Helix 45	45	L	2	16	Right-handed alpha
Helix 46	46	L	18	25	Right-handed alpha
Helix 47	47	L	42	52	Right-handed alpha
Helix 48	48	L	115	124	Right-handed alpha
Helix 49	49	M	2	16	Right-handed alpha
Helix 50	50	M	18	25	Right-handed alpha
Helix 51	51	M	42	52	Right-handed alpha
Helix 52	52	M	115	123	Right-handed alpha
Helix 53	53	N	2	16	Right-handed alpha
Helix 54	54	N	18	25	Right-handed alpha
Helix 55	55	N	42	52	Right-handed alpha
Helix 56	56	N	115	124	Right-handed alpha
Helix 57	57	O	2	16	Right-handed alpha
Helix 58	58	O	18	25	Right-handed alpha
Helix 59	59	O	42	52	Right-handed alpha
Helix 60	60	O	115	124	Right-handed alpha
Helix 61	61	P	2	16	Right-handed alpha
Helix 62	62	P	18	25	Right-handed alpha
Helix 63	63	P	42	52	Right-handed alpha
Helix 64	64	P	115	123	Right-handed alpha

There are 16 sheets in PDB entry 5AII. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A, EA, FA, GA, HA, IA, JA, KA, LA, MA, NA, OA, PA,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	41	first strand
Strand 2	A	26	34	anti-parallel
Strand 3	A	106	113	parallel
Strand 4	A	91	103	anti-parallel
Strand 5	A	73	86	anti-parallel
Strand 6	A	55	67	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	41	first strand
Strand 2	B	26	34	anti-parallel
Strand 3	B	106	113	parallel
Strand 4	B	91	103	anti-parallel
Strand 5	B	73	86	anti-parallel
Strand 6	B	55	67	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	41	first strand
Strand 2	C	26	34	anti-parallel
Strand 3	C	106	113	parallel
Strand 4	C	91	103	anti-parallel
Strand 5	C	73	86	anti-parallel
Strand 6	C	55	67	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	40	41	first strand
Strand 2	D	26	34	anti-parallel
Strand 3	D	106	113	parallel
Strand 4	D	91	103	anti-parallel
Strand 5	D	73	86	anti-parallel
Strand 6	D	55	67	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	40	41	first strand
Strand 2	E	26	34	anti-parallel
Strand 3	E	106	113	parallel
Strand 4	E	91	103	anti-parallel
Strand 5	E	73	86	anti-parallel
Strand 6	E	55	67	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	40	41	first strand
Strand 2	F	26	34	anti-parallel
Strand 3	F	106	113	parallel
Strand 4	F	91	103	anti-parallel
Strand 5	F	73	86	anti-parallel
Strand 6	F	55	67	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	40	41	first strand
Strand 2	G	26	34	anti-parallel
Strand 3	G	106	113	parallel
Strand 4	G	91	103	anti-parallel
Strand 5	G	73	86	anti-parallel
Strand 6	G	55	67	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	40	41	first strand
Strand 2	H	26	34	anti-parallel
Strand 3	H	106	113	parallel
Strand 4	H	91	103	anti-parallel
Strand 5	H	73	86	anti-parallel
Strand 6	H	55	67	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in IA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	40	41	first strand
Strand 2	I	26	34	anti-parallel
Strand 3	I	106	113	parallel
Strand 4	I	91	103	anti-parallel
Strand 5	I	73	86	anti-parallel
Strand 6	I	55	67	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in JA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	40	41	first strand
Strand 2	J	26	34	anti-parallel
Strand 3	J	106	113	parallel
Strand 4	J	91	103	anti-parallel
Strand 5	J	73	86	anti-parallel
Strand 6	J	55	67	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in KA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	40	41	first strand
Strand 2	K	26	34	anti-parallel
Strand 3	K	106	113	parallel
Strand 4	K	91	103	anti-parallel
Strand 5	K	73	86	anti-parallel
Strand 6	K	55	67	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in LA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	40	41	first strand
Strand 2	L	26	34	anti-parallel
Strand 3	L	106	113	parallel
Strand 4	L	91	103	anti-parallel
Strand 5	L	73	86	anti-parallel
Strand 6	L	55	67	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in MA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	40	41	first strand
Strand 2	M	26	34	anti-parallel
Strand 3	M	106	113	parallel
Strand 4	M	91	103	anti-parallel
Strand 5	M	73	86	anti-parallel
Strand 6	M	55	67	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in NA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	40	41	first strand
Strand 2	N	26	34	anti-parallel
Strand 3	N	106	113	parallel
Strand 4	N	91	103	anti-parallel
Strand 5	N	73	86	anti-parallel
Strand 6	N	55	67	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in OA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	40	41	first strand
Strand 2	O	26	34	anti-parallel
Strand 3	O	106	113	parallel
Strand 4	O	91	103	anti-parallel
Strand 5	O	73	86	anti-parallel
Strand 6	O	55	67	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in PA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	40	41	first strand
Strand 2	P	26	34	anti-parallel
Strand 3	P	106	113	parallel
Strand 4	P	91	103	anti-parallel
Strand 5	P	73	86	anti-parallel
Strand 6	P	55	67	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5AII

Analysis of interatomic Contacts of Structural Units in PDB entry:
5AII