Analysis of interatomic Contacts of Structural Units in PDB entry:
5AJI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5AJI entry

There are 11 chains in PDB entry 5AJI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 18	ALA 66
A	PHE 68	LYS 281
B	LEU 25	ALA 66
B	PHE 68	ARG 279
C	LEU 25	ALA 66
C	PHE 68	ARG 279
D	LEU 17	ALA 66
D	PHE 68	ARG 279
E	LEU 17	ALA 66
E	PHE 68	LYS 278
F	LEU 25	ASN 30

There are 42 helices in PDB entry 5AJI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	21	59	Right-handed alpha
Helix 2	2	A	62	88	Right-handed alpha
Helix 3	3	A	92	128	Right-handed alpha
Helix 4	4	A	167	173	Right-handed alpha
Helix 5	5	A	197	212	Right-handed alpha
Helix 6	6	A	245	265	Right-handed alpha
Helix 7	7	B	26	59	Right-handed alpha
Helix 8	8	B	62	88	Right-handed alpha
Helix 9	9	B	92	128	Right-handed alpha
Helix 10	10	B	167	173	Right-handed alpha
Helix 11	11	B	197	212	Right-handed alpha
Helix 12	12	B	245	265	Right-handed alpha
Helix 13	13	C	26	59	Right-handed alpha
Helix 14	14	C	62	88	Right-handed alpha
Helix 15	15	C	92	128	Right-handed alpha
Helix 16	16	C	167	173	Right-handed alpha
Helix 17	17	C	197	212	Right-handed alpha
Helix 18	18	C	245	265	Right-handed alpha
Helix 19	19	D	21	59	Right-handed alpha
Helix 20	20	D	62	88	Right-handed alpha
Helix 21	21	D	92	128	Right-handed alpha
Helix 22	22	D	167	173	Right-handed alpha
Helix 23	23	D	197	212	Right-handed alpha
Helix 24	24	D	245	265	Right-handed alpha
Helix 25	25	E	21	59	Right-handed alpha
Helix 26	26	E	62	88	Right-handed alpha
Helix 27	27	E	92	128	Right-handed alpha
Helix 28	28	E	167	173	Right-handed alpha
Helix 29	29	E	197	212	Right-handed alpha
Helix 30	30	E	245	265	Right-handed alpha
Helix 31	31	F	26	59	Right-handed alpha
Helix 32	32	F	62	89	Right-handed alpha
Helix 33	33	F	92	128	Right-handed alpha
Helix 34	34	F	167	173	Right-handed alpha
Helix 35	35	F	197	212	Right-handed alpha
Helix 36	36	F	245	265	Right-handed alpha
Helix 37	37	G	26	59	Right-handed alpha
Helix 38	38	G	62	88	Right-handed alpha
Helix 39	39	G	92	128	Right-handed alpha
Helix 40	40	G	167	173	Right-handed alpha
Helix 41	41	G	197	212	Right-handed alpha
Helix 42	42	G	245	265	Right-handed alpha

There are 9 sheets in PDB entry 5AJI. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, CA, A, EA, FA, GA,

There are 36 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	135	138	first strand
Strand 2	A	142	148	parallel
Strand 3	A	152	156	parallel
Strand 4	A	162	166	parallel
Strand 5	G	175	177	parallel
Strand 6	G	135	138	parallel
Strand 7	G	142	148	parallel
Strand 8	G	152	156	parallel
Strand 9	G	162	166	parallel
Strand 10	F	175	177	parallel
Strand 11	F	135	138	parallel
Strand 12	F	142	148	parallel
Strand 13	F	152	156	parallel
Strand 14	F	162	166	parallel
Strand 15	E	175	177	parallel
Strand 16	E	135	138	parallel
Strand 17	E	142	148	parallel
Strand 18	E	152	156	parallel
Strand 19	E	162	166	parallel
Strand 20	D	175	177	parallel
Strand 21	D	135	138	parallel
Strand 22	D	142	148	parallel
Strand 23	D	152	156	parallel
Strand 24	D	162	166	parallel
Strand 25	C	175	177	parallel
Strand 26	C	135	138	parallel
Strand 27	C	142	148	parallel
Strand 28	C	152	156	parallel
Strand 29	C	162	166	parallel
Strand 30	B	175	177	parallel
Strand 31	B	135	138	parallel
Strand 32	B	142	148	parallel
Strand 33	B	152	156	parallel
Strand 34	B	162	166	parallel
Strand 35	A	175	177	parallel
Strand 36	A	135	138	parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	192	first strand
Strand 2	A	233	242	anti-parallel
Strand 3	A	221	228	anti-parallel

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There are 8 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	279	first strand
Strand 2	G	272	278	parallel
Strand 3	F	272	279	parallel
Strand 4	E	272	277	parallel
Strand 5	D	272	278	parallel
Strand 6	C	272	278	parallel
Strand 7	B	272	278	parallel
Strand 8	A	272	279	parallel

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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	192	first strand
Strand 2	B	233	242	anti-parallel
Strand 3	B	221	228	anti-parallel

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There are 3 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	192	first strand
Strand 2	C	233	242	anti-parallel
Strand 3	C	221	228	anti-parallel

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There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	183	192	first strand
Strand 2	D	233	242	anti-parallel
Strand 3	D	221	228	anti-parallel

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There are 3 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	183	192	first strand
Strand 2	E	233	242	anti-parallel
Strand 3	E	221	228	anti-parallel

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There are 3 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	183	192	first strand
Strand 2	F	233	242	anti-parallel
Strand 3	F	221	228	anti-parallel

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There are 3 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	183	192	first strand
Strand 2	G	233	242	anti-parallel
Strand 3	G	221	228	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5AJI

Analysis of interatomic Contacts of Structural Units in PDB entry:
5AJI