Analysis of interatomic Contacts of Structural Units in PDB entry:
5AM1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AM1 entry

There is 1 chain in PDB entry 5AM1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2ARG 547
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 5AM1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 20Right-handed 310
Helix 2
2
A
21 30Right-handed alpha
Helix 3
3
A
35 42Right-handed alpha
Helix 4
4
A
44 47Right-handed 310
Helix 5
5
A
48 55Right-handed alpha
Helix 6
6
A
59 78Right-handed alpha
Helix 7
7
A
87 99Right-handed alpha
Helix 8
8
A
102 115Right-handed alpha
Helix 9
9
A
133 145Right-handed alpha
Helix 10
10
A
153 157Right-handed alpha
Helix 11
11
A
163 174Right-handed alpha
Helix 12
12
A
176 178Right-handed 310
Helix 13
13
A
186 195Right-handed alpha
Helix 14
14
A
205 218Right-handed alpha
Helix 15
15
A
233 237Right-handed 310
Helix 16
16
A
270 275Right-handed 310
Helix 17
17
A
276 284Right-handed alpha
Helix 18
18
A
304 308Right-handed 310
Helix 19
19
A
309 325Right-handed alpha
Helix 20
20
A
335 348Right-handed alpha
Helix 21
21
A
370 378Right-handed alpha
Helix 22
22
A
379 381Right-handed 310
Helix 23
23
A
382 387Right-handed alpha
Helix 24
24
A
391 400Right-handed alpha
Helix 25
25
A
400 409Right-handed alpha
Helix 26
26
A
421 426Right-handed alpha
Helix 27
27
A
443 455Right-handed alpha
Helix 28
28
A
459 465Right-handed alpha
Helix 29
29
A
468 477Right-handed alpha
Helix 30
30
A
478 480Right-handed 310
Helix 31
31
A
500 505Right-handed 310
Helix 32
32
A
506 510Right-handed 310
Helix 33
33
A
525 530Right-handed alpha
Helix 34
34
A
530 546Right-handed alpha
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There are 3 sheets in PDB entry 5AM1. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 152first strand
Strand 2
A
118 123parallel
Strand 3
A
5 8parallel
Strand 4
A
180 184parallel
Strand 5
A
199 202parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 16first strand
Strand 2
A
100 101anti-parallel
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There are 8 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 245first strand
Strand 2
A
248 255anti-parallel
Strand 3
A
287 291anti-parallel
Strand 4
A
260 264parallel
Strand 5
A
329 334parallel
Strand 6
A
352 358parallel
Strand 7
A
488 493parallel
Strand 8
A
515 519parallel
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