Analysis of interatomic Contacts of Structural Units in PDB entry:
5AM8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AM8 entry

There are 3 chains in PDB entry 5AM8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LEU 1GLU 609
B
LEU 1GLU 609
C
LEU 1GLY 16
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are117 helices in PDB entry 5AM8. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
2 6Right-handed 310
Helix 2
2
A
13 44Right-handed alpha
Helix 3
3
A
47 77Right-handed alpha
Helix 4
4
A
79 83Right-handed 310
Helix 5
5
A
85 96Right-handed alpha
Helix 6
6
A
98 103Right-handed 310
Helix 7
7
A
104 125Right-handed alpha
Helix 8
8
A
141 150Right-handed alpha
Helix 9
9
A
152 188Right-handed alpha
Helix 10
10
A
193 201Right-handed alpha
Helix 11
11
A
206 238Right-handed alpha
Helix 12
12
A
261 263Right-handed 310
Helix 13
13
A
264 269Right-handed alpha
Helix 14
14
A
279 286Right-handed alpha
Helix 15
15
A
289 304Right-handed alpha
Helix 16
16
A
310 317Right-handed alpha
Helix 17
17
A
352 373Right-handed alpha
Helix 18
18
A
376 380Right-handed 310
Helix 19
19
A
384 408Right-handed alpha
Helix 20
20
A
417 433Right-handed alpha
Helix 21
21
A
434 451Right-handed alpha
Helix 22
22
A
455 457Right-handed 310
Helix 23
23
A
458 472Right-handed alpha
Helix 24
24
A
484 489Right-handed 310
Helix 25
25
A
498 519Right-handed alpha
Helix 26
26
A
524 528Right-handed 310
Helix 27
27
A
533 547Right-handed alpha
Helix 28
28
A
551 561Right-handed alpha
Helix 29
29
A
567 588Right-handed alpha
Helix 30
30
B
2 6Right-handed 310
Helix 31
31
B
13 44Right-handed alpha
Helix 32
32
B
47 77Right-handed alpha
Helix 33
33
B
79 83Right-handed 310
Helix 34
34
B
85 96Right-handed alpha
Helix 35
35
B
98 103Right-handed 310
Helix 36
36
B
104 125Right-handed alpha
Helix 37
37
B
141 150Right-handed alpha
Helix 38
38
B
152 188Right-handed alpha
Helix 39
39
B
193 201Right-handed alpha
Helix 40
40
B
206 238Right-handed alpha
Helix 41
41
B
261 263Right-handed 310
Helix 42
42
B
264 269Right-handed alpha
Helix 43
43
B
279 286Right-handed alpha
Helix 44
44
B
289 304Right-handed alpha
Helix 45
45
B
310 317Right-handed alpha
Helix 46
46
B
352 373Right-handed alpha
Helix 47
47
B
376 380Right-handed 310
Helix 48
48
B
384 400Right-handed alpha
Helix 49
49
B
401 408Right-handed alpha
Helix 50
50
B
417 433Right-handed alpha
Helix 51
51
B
435 451Right-handed alpha
Helix 52
52
B
455 457Right-handed 310
Helix 53
53
B
458 472Right-handed alpha
Helix 54
54
B
484 489Right-handed 310
Helix 55
55
B
498 519Right-handed alpha
Helix 56
56
B
524 528Right-handed 310
Helix 57
57
B
533 547Right-handed alpha
Helix 58
58
B
551 561Right-handed alpha
Helix 59
59
B
567 589Right-handed alpha
Helix 60
60
C
2 6Right-handed 310
Helix 61
61
C
13 44Right-handed alpha
Helix 62
62
C
47 77Right-handed alpha
Helix 63
63
C
79 83Right-handed 310
Helix 64
64
C
85 96Right-handed alpha
Helix 65
65
C
98 103Right-handed 310
Helix 66
66
C
104 125Right-handed alpha
Helix 67
67
C
141 150Right-handed alpha
Helix 68
68
C
152 188Right-handed alpha
Helix 69
69
C
193 201Right-handed alpha
Helix 70
70
C
206 238Right-handed alpha
Helix 71
71
C
261 263Right-handed 310
Helix 72
72
C
264 269Right-handed alpha
Helix 73
73
C
279 286Right-handed alpha
Helix 74
74
C
289 304Right-handed alpha
Helix 75
75
C
310 317Right-handed alpha
Helix 76
76
C
352 373Right-handed alpha
Helix 77
77
C
376 380Right-handed 310
Helix 78
78
C
384 408Right-handed alpha
Helix 79
79
C
417 433Right-handed alpha
Helix 80
80
C
434 451Right-handed alpha
Helix 81
81
C
455 457Right-handed 310
Helix 82
82
C
458 472Right-handed alpha
Helix 83
83
C
484 489Right-handed 310
Helix 84
84
C
498 519Right-handed alpha
Helix 85
85
C
524 528Right-handed 310
Helix 86
86
C
533 547Right-handed alpha
Helix 87
87
C
551 561Right-handed alpha
Helix 88
88
C
567 588Right-handed alpha
Helix 89
89
D
2 6Right-handed 310
Helix 90
90
D
13 44Right-handed alpha
Helix 91
91
D
47 77Right-handed alpha
Helix 92
92
D
79 83Right-handed 310
Helix 93
93
D
85 96Right-handed alpha
Helix 94
94
D
98 103Right-handed 310
Helix 95
95
D
104 125Right-handed alpha
Helix 96
96
D
141 150Right-handed alpha
Helix 97
97
D
152 188Right-handed alpha
Helix 98
98
D
193 201Right-handed alpha
Helix 99
99
D
206 238Right-handed alpha
Helix 100
100
D
261 263Right-handed 310
Helix 101
101
D
264 269Right-handed alpha
Helix 102
102
D
279 287Right-handed alpha
Helix 103
103
D
289 304Right-handed alpha
Helix 104
104
D
310 317Right-handed alpha
Helix 105
105
D
352 373Right-handed alpha
Helix 106
106
D
376 380Right-handed 310
Helix 107
107
D
384 408Right-handed alpha
Helix 108
108
D
417 433Right-handed alpha
Helix 109
109
D
435 451Right-handed alpha
Helix 110
110
D
455 457Right-handed 310
Helix 111
111
D
458 472Right-handed alpha
Helix 112
112
D
484 489Right-handed 310
Helix 113
113
D
498 519Right-handed alpha
Helix 114
114
D
524 528Right-handed 310
Helix 115
115
D
533 547Right-handed alpha
Helix 116
116
D
551 561Right-handed alpha
Helix 117
117
D
567 588Right-handed alpha
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There are 11 sheets in PDB entry 5AM8. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, CA, CB, CC, A, DB,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
126 128first strand
Strand 2
A
136 138anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
248 249first strand
Strand 2
A
473 474parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
333 336first strand
Strand 2
A
343 346anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
126 128first strand
Strand 2
B
136 138anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
248 249first strand
Strand 2
B
473 474parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
333 336first strand
Strand 2
B
343 346anti-parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
126 128first strand
Strand 2
C
136 138anti-parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
248 249first strand
Strand 2
C
473 474parallel
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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
333 336first strand
Strand 2
C
343 346anti-parallel
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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
248 249first strand
Strand 2
D
473 474parallel
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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
333 336first strand
Strand 2
D
343 346anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il