Analysis of interatomic Contacts of Structural Units in PDB entry:
5AO4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AO4 entry

There are 4 chains in PDB entry 5AO4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 115ASP 583
B
MET 115PRO 581
C
PRO 114LYS 580
D
VAL 117GLY 203
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 98 helices in PDB entry 5AO4. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
129 137Right-handed alpha
Helix 2
2
A
141 147Right-handed 310
Helix 3
3
A
150 156Right-handed 310
Helix 4
4
A
163 186Right-handed alpha
Helix 5
5
A
187 190Right-handed 310
Helix 6
6
A
192 205Right-handed alpha
Helix 7
7
A
214 220Right-handed alpha
Helix 8
8
A
220 226Right-handed alpha
Helix 9
9
A
232 249Right-handed alpha
Helix 10
10
A
250 257Right-handed alpha
Helix 11
11
A
260 273Right-handed alpha
Helix 12
12
A
291 300Right-handed 310
Helix 13
13
A
309 324Right-handed alpha
Helix 14
14
A
330 337Right-handed alpha
Helix 15
15
A
355 373Right-handed alpha
Helix 16
16
A
376 394Right-handed alpha
Helix 17
17
A
402 404Right-handed 310
Helix 18
18
A
415 420Right-handed alpha
Helix 19
19
A
424 432Right-handed alpha
Helix 20
20
A
435 437Right-handed 310
Helix 21
21
A
438 451Right-handed alpha
Helix 22
22
A
469 474Right-handed 310
Helix 23
23
A
475 482Right-handed alpha
Helix 24
24
A
494 496Right-handed 310
Helix 25
25
A
560 577Right-handed alpha
Helix 26
26
B
129 137Right-handed alpha
Helix 27
27
B
141 147Right-handed 310
Helix 28
28
B
150 156Right-handed 310
Helix 29
29
B
163 186Right-handed alpha
Helix 30
30
B
187 190Right-handed 310
Helix 31
31
B
192 206Right-handed alpha
Helix 32
32
B
213 217Right-handed 310
Helix 33
33
B
220 226Right-handed alpha
Helix 34
34
B
232 249Right-handed alpha
Helix 35
35
B
250 257Right-handed alpha
Helix 36
36
B
260 273Right-handed alpha
Helix 37
37
B
291 300Right-handed 310
Helix 38
38
B
309 324Right-handed alpha
Helix 39
39
B
330 337Right-handed alpha
Helix 40
40
B
356 373Right-handed alpha
Helix 41
41
B
376 394Right-handed alpha
Helix 42
42
B
402 404Right-handed 310
Helix 43
43
B
411 414Right-handed 310
Helix 44
44
B
415 420Right-handed alpha
Helix 45
45
B
424 432Right-handed alpha
Helix 46
46
B
435 437Right-handed 310
Helix 47
47
B
438 450Right-handed alpha
Helix 48
48
B
470 474Right-handed 310
Helix 49
49
B
475 482Right-handed alpha
Helix 50
50
B
494 496Right-handed 310
Helix 51
51
B
560 576Right-handed alpha
Helix 52
52
C
129 137Right-handed alpha
Helix 53
53
C
141 147Right-handed 310
Helix 54
54
C
150 156Right-handed 310
Helix 55
55
C
163 186Right-handed alpha
Helix 56
56
C
187 190Right-handed 310
Helix 57
57
C
192 205Right-handed alpha
Helix 58
58
C
214 221Right-handed alpha
Helix 59
59
C
221 226Right-handed alpha
Helix 60
60
C
232 249Right-handed alpha
Helix 61
61
C
250 257Right-handed alpha
Helix 62
62
C
260 273Right-handed alpha
Helix 63
63
C
291 296Right-handed 310
Helix 64
64
C
297 302Right-handed alpha
Helix 65
65
C
309 324Right-handed alpha
Helix 66
66
C
330 337Right-handed alpha
Helix 67
67
C
355 373Right-handed alpha
Helix 68
68
C
376 394Right-handed alpha
Helix 69
69
C
415 420Right-handed alpha
Helix 70
70
C
424 432Right-handed alpha
Helix 71
71
C
435 437Right-handed 310
Helix 72
72
C
438 450Right-handed alpha
Helix 73
73
C
470 476Right-handed 310
Helix 74
74
C
561 576Right-handed alpha
Helix 75
75
D
129 137Right-handed alpha
Helix 76
76
D
141 147Right-handed 310
Helix 77
77
D
150 156Right-handed 310
Helix 78
78
D
163 186Right-handed alpha
Helix 79
79
D
187 190Right-handed 310
Helix 80
80
D
192 206Right-handed alpha
Helix 81
81
D
214 220Right-handed alpha
Helix 82
82
D
220 226Right-handed alpha
Helix 83
83
D
232 249Right-handed alpha
Helix 84
84
D
250 257Right-handed alpha
Helix 85
85
D
260 273Right-handed alpha
Helix 86
86
D
291 300Right-handed 310
Helix 87
87
D
309 324Right-handed alpha
Helix 88
88
D
330 337Right-handed alpha
Helix 89
89
D
356 373Right-handed alpha
Helix 90
90
D
376 393Right-handed alpha
Helix 91
91
D
402 404Right-handed 310
Helix 92
92
D
410 414Right-handed 310
Helix 93
93
D
415 420Right-handed alpha
Helix 94
94
D
424 432Right-handed alpha
Helix 95
95
D
435 437Right-handed 310
Helix 96
96
D
438 450Right-handed alpha
Helix 97
97
D
475 482Right-handed alpha
Helix 98
98
D
560 576Right-handed alpha
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There are 15 sheets in PDB entry 5AO4. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD, CA, CB, CC, A, DB, C, DD,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
116 120first strand
Strand 2
A
124 128anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
338 343first strand
Strand 2
A
346 352anti-parallel
Strand 3
A
520 521parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
399 400first strand
Strand 2
A
406 407anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
455 460first strand
Strand 2
A
548 554anti-parallel
Strand 3
A
498 504anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
116 120first strand
Strand 2
B
124 128anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
339 342first strand
Strand 2
B
347 352anti-parallel
Strand 3
B
520 521parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
399 400first strand
Strand 2
B
406 407anti-parallel
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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
455 460first strand
Strand 2
B
548 554anti-parallel
Strand 3
B
498 504anti-parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
116 120first strand
Strand 2
C
124 128anti-parallel
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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
338 343first strand
Strand 2
C
346 352anti-parallel
Strand 3
C
520 521parallel
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There are 3 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
455 460first strand
Strand 2
C
548 554anti-parallel
Strand 3
C
498 504anti-parallel
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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
118 120first strand
Strand 2
D
124 126anti-parallel
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There are 3 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
338 342first strand
Strand 2
D
347 352anti-parallel
Strand 3
D
520 521parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
399 400first strand
Strand 2
D
406 407anti-parallel
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There are 3 strands in DD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
458 459first strand
Strand 2
D
550 552anti-parallel
Strand 3
D
501 502anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il