Analysis of interatomic Contacts of Structural Units in PDB entry:
5AOD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AOD entry

There is 1 chain in PDB entry 5AOD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -2ASP 471
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5AOD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-1 12Right-handed alpha
Helix 2
2
A
16 21Right-handed alpha
Helix 3
3
A
79 84Right-handed alpha
Helix 4
4
A
119 138Right-handed alpha
Helix 5
5
A
157 166Right-handed alpha
Helix 6
6
A
168 176Right-handed alpha
Helix 7
7
A
179 185Right-handed alpha
Helix 8
8
A
209 213Right-handed 310
Helix 9
9
A
219 226Right-handed alpha
Helix 10
10
A
258 269Right-handed alpha
Helix 11
11
A
277 283Right-handed alpha
Helix 12
12
A
307 317Right-handed alpha
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There are 10 sheets in PDB entry 5AOD. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 24first strand
Strand 2
A
344 359parallel
Strand 3
A
42 57anti-parallel
Strand 4
A
32 39anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
327 335anti-parallel
Strand 3
A
234 252anti-parallel
Strand 4
A
286 292parallel
Strand 5
A
300 306parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
327 335anti-parallel
Strand 3
A
234 252anti-parallel
Strand 4
A
189 204anti-parallel
Strand 5
A
147 154anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 77first strand
Strand 2
A
234 252parallel
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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
327 335anti-parallel
Strand 3
A
234 252anti-parallel
Strand 4
A
75 77parallel
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There are 6 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 115first strand
Strand 2
A
97 102parallel
Strand 3
A
189 204anti-parallel
Strand 4
A
234 252anti-parallel
Strand 5
A
286 292parallel
Strand 6
A
300 306parallel
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There are 6 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
327 335anti-parallel
Strand 3
A
234 252anti-parallel
Strand 4
A
189 204anti-parallel
Strand 5
A
97 102anti-parallel
Strand 6
A
112 115parallel
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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 115first strand
Strand 2
A
97 102parallel
Strand 3
A
189 204anti-parallel
Strand 4
A
147 154anti-parallel
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There are 4 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
408 414first strand
Strand 2
A
361 367anti-parallel
Strand 3
A
450 457parallel
Strand 4
A
462 468anti-parallel
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There are 4 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
390 396first strand
Strand 2
A
373 384anti-parallel
Strand 3
A
418 428anti-parallel
Strand 4
A
436 445anti-parallel
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