Analysis of interatomic Contacts of Structural Units in PDB entry:
5AQF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AQF entry

There are 4 chains in PDB entry 5AQF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0SER 381
B
 GLY 149GLU 261
C
 MET 1SER 381
D
 LEU 148GLN 260
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 5AQF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
52 58Right-handed alpha
Helix 2
2
A
62 64Right-handed 310
Helix 3
3
A
69 73Right-handed 310
Helix 4
4
A
80 87Right-handed alpha
Helix 5
5
A
115 136Right-handed alpha
Helix 6
6
A
151 165Right-handed alpha
Helix 7
7
A
175 183Right-handed alpha
Helix 8
8
A
184 188Right-handed 310
Helix 9
9
A
229 250Right-handed alpha
Helix 10
10
A
256 274Right-handed alpha
Helix 11
11
A
299 306Right-handed alpha
Helix 12
12
A
306 312Right-handed alpha
Helix 13
13
A
313 325Right-handed alpha
Helix 14
14
A
327 331Right-handed 310
Helix 15
15
A
338 342Right-handed 310
Helix 16
16
A
343 354Right-handed alpha
Helix 17
17
A
367 380Right-handed alpha
Helix 18
18
B
152 188Right-handed alpha
Helix 19
19
B
192 202Right-handed alpha
Helix 20
20
B
203 222Right-handed alpha
Helix 21
21
B
230 257Right-handed alpha
Helix 22
22
C
52 58Right-handed alpha
Helix 23
23
C
62 64Right-handed 310
Helix 24
24
C
69 73Right-handed 310
Helix 25
25
C
80 87Right-handed alpha
Helix 26
26
C
115 136Right-handed alpha
Helix 27
27
C
151 165Right-handed alpha
Helix 28
28
C
175 183Right-handed alpha
Helix 29
29
C
184 188Right-handed 310
Helix 30
30
C
229 250Right-handed alpha
Helix 31
31
C
256 275Right-handed alpha
Helix 32
32
C
299 306Right-handed alpha
Helix 33
33
C
306 313Right-handed alpha
Helix 34
34
C
313 325Right-handed alpha
Helix 35
35
C
327 331Right-handed 310
Helix 36
36
C
338 342Right-handed 310
Helix 37
37
C
343 354Right-handed alpha
Helix 38
38
C
367 380Right-handed alpha
Helix 39
39
D
152 188Right-handed alpha
Helix 40
40
D
192 202Right-handed alpha
Helix 41
41
D
203 222Right-handed alpha
Helix 42
42
D
230 258Right-handed alpha
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There are 16 sheets in PDB entry 5AQF. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, CA, CB, CC, CD, CE, CF, CG, CH,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 28first strand
Strand 2
A
15 22parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 39first strand
Strand 2
A
15 22anti-parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 174first strand
Strand 2
A
141 146parallel
Strand 3
A
7 10parallel
Strand 4
A
15 22anti-parallel
Strand 5
A
25 28parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 174first strand
Strand 2
A
141 146parallel
Strand 3
A
7 10parallel
Strand 4
A
15 22anti-parallel
Strand 5
A
38 39anti-parallel
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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 51first strand
Strand 2
A
42 44anti-parallel
Strand 3
A
66 67anti-parallel
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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 97first strand
Strand 2
A
100 107anti-parallel
Strand 3
A
110 114anti-parallel
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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 225first strand
Strand 2
A
205 213anti-parallel
Strand 3
A
193 200anti-parallel
Strand 4
A
333 337parallel
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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 288first strand
Strand 2
A
291 298anti-parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
25 28first strand
Strand 2
C
15 22parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
38 39first strand
Strand 2
C
15 22anti-parallel
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There are 5 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
168 174first strand
Strand 2
C
141 146parallel
Strand 3
C
7 10parallel
Strand 4
C
15 22anti-parallel
Strand 5
C
25 28parallel
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There are 5 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
168 174first strand
Strand 2
C
141 146parallel
Strand 3
C
7 10parallel
Strand 4
C
15 22anti-parallel
Strand 5
C
38 39anti-parallel
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There are 3 strands in CE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
49 51first strand
Strand 2
C
42 44anti-parallel
Strand 3
C
66 67anti-parallel
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There are 3 strands in CF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
93 97first strand
Strand 2
C
100 107anti-parallel
Strand 3
C
110 114anti-parallel
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There are 4 strands in CG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
216 225first strand
Strand 2
C
205 213anti-parallel
Strand 3
C
193 200anti-parallel
Strand 4
C
333 337parallel
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There are 2 strands in CH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
279 288first strand
Strand 2
C
291 298anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il