Analysis of interatomic Contacts of Structural Units in PDB entry:
5AQO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AQO entry

There are 5 chains in PDB entry 5AQO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 381
B
 GLY 149GLN 260
C
 MET 1SER 381
D
 LEU 148GLN 260
E
 SER 0SER 329
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 5AQO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
52 58Right-handed alpha
Helix 2
2
A
69 73Right-handed 310
Helix 3
3
A
80 87Right-handed alpha
Helix 4
4
A
88 90Right-handed 310
Helix 5
5
A
115 136Right-handed alpha
Helix 6
6
A
151 165Right-handed alpha
Helix 7
7
A
175 183Right-handed alpha
Helix 8
8
A
229 250Right-handed alpha
Helix 9
9
A
256 274Right-handed alpha
Helix 10
10
A
299 306Right-handed alpha
Helix 11
11
A
306 313Right-handed alpha
Helix 12
12
A
313 324Right-handed alpha
Helix 13
13
A
327 331Right-handed 310
Helix 14
14
A
338 342Right-handed 310
Helix 15
15
A
343 354Right-handed alpha
Helix 16
16
A
367 380Right-handed alpha
Helix 17
17
B
152 188Right-handed alpha
Helix 18
18
B
192 203Right-handed alpha
Helix 19
19
B
203 222Right-handed alpha
Helix 20
20
B
230 256Right-handed alpha
Helix 21
21
C
52 58Right-handed alpha
Helix 22
22
C
69 73Right-handed 310
Helix 23
23
C
80 88Right-handed alpha
Helix 24
24
C
115 136Right-handed alpha
Helix 25
25
C
151 165Right-handed alpha
Helix 26
26
C
175 183Right-handed alpha
Helix 27
27
C
229 250Right-handed alpha
Helix 28
28
C
256 274Right-handed alpha
Helix 29
29
C
299 306Right-handed alpha
Helix 30
30
C
306 313Right-handed alpha
Helix 31
31
C
313 324Right-handed alpha
Helix 32
32
C
327 331Right-handed 310
Helix 33
33
C
338 342Right-handed 310
Helix 34
34
C
343 354Right-handed alpha
Helix 35
35
C
367 380Right-handed alpha
Helix 36
36
D
152 188Right-handed alpha
Helix 37
37
D
192 202Right-handed alpha
Helix 38
38
D
203 222Right-handed alpha
Helix 39
39
D
230 256Right-handed alpha
Helix 40
40
E
52 58Right-handed alpha
Helix 41
41
E
69 73Right-handed 310
Helix 42
42
E
80 88Right-handed alpha
Helix 43
43
E
115 136Right-handed alpha
Helix 44
44
E
151 165Right-handed alpha
Helix 45
45
E
175 183Right-handed alpha
Helix 46
46
E
229 250Right-handed alpha
Helix 47
47
E
256 274Right-handed alpha
Helix 48
48
E
299 306Right-handed alpha
Helix 49
49
E
306 313Right-handed alpha
Helix 50
50
E
313 324Right-handed alpha
Helix 51
51
E
327 331Right-handed 310
Helix 52
52
E
338 342Right-handed 310
Helix 53
53
E
343 354Right-handed alpha
Helix 54
54
E
367 380Right-handed alpha
Helix 55
55
F
152 188Right-handed alpha
Helix 56
56
F
192 202Right-handed alpha
Helix 57
57
F
203 222Right-handed alpha
Helix 58
58
F
230 258Right-handed alpha
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There are 24 sheets in PDB entry 5AQO. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, CA, CB, CC, CD, CE, CF, CG, CH, EA, EB, EC, ED, EE, EF, EG, EH,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 28first strand
Strand 2
A
15 22parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 39first strand
Strand 2
A
15 22anti-parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 174first strand
Strand 2
A
141 146parallel
Strand 3
A
7 10parallel
Strand 4
A
15 22anti-parallel
Strand 5
A
25 28parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 174first strand
Strand 2
A
141 146parallel
Strand 3
A
7 10parallel
Strand 4
A
15 22anti-parallel
Strand 5
A
38 39anti-parallel
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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 51first strand
Strand 2
A
42 44anti-parallel
Strand 3
A
66 67anti-parallel
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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 97first strand
Strand 2
A
100 107anti-parallel
Strand 3
A
110 114anti-parallel
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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 225first strand
Strand 2
A
204 213anti-parallel
Strand 3
A
193 201anti-parallel
Strand 4
A
333 337parallel
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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 288first strand
Strand 2
A
291 298anti-parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
25 28first strand
Strand 2
C
15 22parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
38 39first strand
Strand 2
C
15 22anti-parallel
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There are 5 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
168 174first strand
Strand 2
C
141 146parallel
Strand 3
C
7 10parallel
Strand 4
C
15 22anti-parallel
Strand 5
C
25 28parallel
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There are 5 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
168 174first strand
Strand 2
C
141 146parallel
Strand 3
C
7 10parallel
Strand 4
C
15 22anti-parallel
Strand 5
C
38 39anti-parallel
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There are 3 strands in CE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
49 51first strand
Strand 2
C
42 44anti-parallel
Strand 3
C
66 67anti-parallel
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There are 3 strands in CF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
93 97first strand
Strand 2
C
100 107anti-parallel
Strand 3
C
110 114anti-parallel
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There are 4 strands in CG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
216 225first strand
Strand 2
C
204 213anti-parallel
Strand 3
C
193 201anti-parallel
Strand 4
C
333 337parallel
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There are 2 strands in CH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
279 288first strand
Strand 2
C
291 298anti-parallel
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There are 2 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
25 28first strand
Strand 2
E
15 22parallel
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There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
38 39first strand
Strand 2
E
15 22anti-parallel
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There are 5 strands in EC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
168 174first strand
Strand 2
E
141 146parallel
Strand 3
E
7 10parallel
Strand 4
E
15 22anti-parallel
Strand 5
E
25 28parallel
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There are 5 strands in ED sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
168 174first strand
Strand 2
E
141 146parallel
Strand 3
E
7 10parallel
Strand 4
E
15 22anti-parallel
Strand 5
E
38 39anti-parallel
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There are 3 strands in EE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
49 51first strand
Strand 2
E
42 44anti-parallel
Strand 3
E
66 67anti-parallel
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There are 3 strands in EF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
93 97first strand
Strand 2
E
100 107anti-parallel
Strand 3
E
110 114anti-parallel
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There are 4 strands in EG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
216 225first strand
Strand 2
E
204 213anti-parallel
Strand 3
E
193 201anti-parallel
Strand 4
E
333 337parallel
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There are 2 strands in EH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
279 288first strand
Strand 2
E
291 298anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il