Analysis of interatomic Contacts of Structural Units in PDB entry:
5AQV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AQV entry

There are 2 chains in PDB entry 5AQV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 4SER 381
B
 GLY 146GLN 260
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5AQV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
52 57Right-handed alpha
Helix 2
2
A
69 73Right-handed 310
Helix 3
3
A
80 87Right-handed alpha
Helix 4
4
A
88 90Right-handed 310
Helix 5
5
A
115 136Right-handed alpha
Helix 6
6
A
151 165Right-handed alpha
Helix 7
7
A
175 183Right-handed alpha
Helix 8
8
A
184 188Right-handed 310
Helix 9
9
A
229 250Right-handed alpha
Helix 10
10
A
256 274Right-handed alpha
Helix 11
11
A
299 306Right-handed alpha
Helix 12
12
A
306 313Right-handed alpha
Helix 13
13
A
313 324Right-handed alpha
Helix 14
14
A
327 331Right-handed 310
Helix 15
15
A
338 342Right-handed 310
Helix 16
16
A
343 354Right-handed alpha
Helix 17
17
A
367 380Right-handed alpha
Helix 18
18
B
152 189Right-handed alpha
Helix 19
19
B
192 222Right-handed alpha
Helix 20
20
B
230 257Right-handed alpha
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There are 8 sheets in PDB entry 5AQV. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 28first strand
Strand 2
A
15 22parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 39first strand
Strand 2
A
15 22anti-parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 174first strand
Strand 2
A
141 146parallel
Strand 3
A
7 10parallel
Strand 4
A
15 22anti-parallel
Strand 5
A
25 28parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 174first strand
Strand 2
A
141 146parallel
Strand 3
A
7 10parallel
Strand 4
A
15 22anti-parallel
Strand 5
A
38 39anti-parallel
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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 51first strand
Strand 2
A
42 44anti-parallel
Strand 3
A
66 67anti-parallel
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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 97first strand
Strand 2
A
100 107anti-parallel
Strand 3
A
110 114anti-parallel
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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 225first strand
Strand 2
A
204 213anti-parallel
Strand 3
A
193 201anti-parallel
Strand 4
A
333 337parallel
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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 288first strand
Strand 2
A
291 298anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il