Analysis of interatomic Contacts of Structural Units in PDB entry:
5AWU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AWU entry

There are 2 chains in PDB entry 5AWU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 559ASN 828
B
 TYR 644ALA 654
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 5AWU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
578 582Right-handed 310
Helix 2
AA2
A
597 602Right-handed alpha
Helix 3
AA3
A
648 663Right-handed alpha
Helix 4
AA4
A
681 686Right-handed 310
Helix 5
AA5
A
711 714Right-handed 310
Helix 6
AA6
A
763 766Right-handed 310
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There are 3 sheets in PDB entry 5AWU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
621 626first strand
Strand 2
A
668 678anti-parallel
Strand 3
A
583 595anti-parallel
Strand 4
A
560 575anti-parallel
Strand 5
A
810 827parallel
Strand 6
A
787 794anti-parallel
Strand 7
A
720 728anti-parallel
Strand 8
A
751 759anti-parallel
Strand 9
A
744 746anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
642 646first strand
Strand 2
A
612 616anti-parallel
Strand 3
A
802 806anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
688 697first strand
Strand 2
A
700 709anti-parallel
Strand 3
A
768 777anti-parallel
Strand 4
A
733 740anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il