Analysis of interatomic Contacts of Structural Units in PDB entry:
5AXH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5AXH entry

There are 2 chains in PDB entry 5AXH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 26	LEU 611
B	ASN 25	LEU 611

There are 29 helices in PDB entry 5AXH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	40	Right-handed alpha
Helix 2	AA2	A	162	175	Right-handed alpha
Helix 3	AA3	A	215	228	Right-handed alpha
Helix 4	AA4	A	251	255	Right-handed 310
Helix 5	AA5	A	286	304	Right-handed alpha
Helix 6	AA6	A	329	346	Right-handed alpha
Helix 7	AA7	A	353	357	Right-handed 310
Helix 8	AA8	A	358	366	Right-handed alpha
Helix 9	AA9	A	383	397	Right-handed alpha
Helix 10	AB1	A	410	414	Right-handed 310
Helix 11	AB2	A	421	435	Right-handed alpha
Helix 12	AB3	A	461	478	Right-handed alpha
Helix 13	AB4	A	478	483	Right-handed alpha
Helix 14	AB5	A	572	576	Right-handed 310
Helix 15	AB6	B	35	40	Right-handed alpha
Helix 16	AB7	B	162	175	Right-handed alpha
Helix 17	AB8	B	215	228	Right-handed alpha
Helix 18	AB9	B	251	255	Right-handed 310
Helix 19	AC1	B	286	304	Right-handed alpha
Helix 20	AC2	B	329	332	Right-handed 310
Helix 21	AC3	B	333	346	Right-handed alpha
Helix 22	AC4	B	353	357	Right-handed 310
Helix 23	AC5	B	358	366	Right-handed alpha
Helix 24	AC6	B	383	397	Right-handed alpha
Helix 25	AC7	B	410	414	Right-handed 310
Helix 26	AC8	B	421	435	Right-handed alpha
Helix 27	AC9	B	461	478	Right-handed alpha
Helix 28	AD1	B	478	483	Right-handed alpha
Helix 29	AD2	B	572	576	Right-handed 310

There are 23 sheets in PDB entry 5AXH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	49	first strand
Strand 2	A	59	67	anti-parallel
Strand 3	A	103	111	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	98	first strand
Strand 2	A	74	84	anti-parallel
Strand 3	A	118	128	anti-parallel
Strand 4	A	131	142	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	155	first strand
Strand 2	A	180	183	parallel
Strand 3	A	231	237	parallel
Strand 4	A	308	312	parallel
Strand 5	A	348	351	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	206	first strand
Strand 2	A	212	214	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	241	first strand
Strand 2	A	278	281	anti-parallel
Strand 3	A	267	269	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	371	374	first strand
Strand 2	A	403	406	parallel
Strand 3	A	438	439	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	418	419	first strand
Strand 2	A	458	459	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	442	443	first strand
Strand 2	A	446	447	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	487	488	first strand
Strand 2	A	509	516	anti-parallel
Strand 3	A	500	501	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	487	488	first strand
Strand 2	A	509	516	anti-parallel
Strand 3	A	519	526	anti-parallel
Strand 4	A	603	609	anti-parallel
Strand 5	A	564	568	anti-parallel
Strand 6	A	578	579	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	493	494	first strand
Strand 2	A	548	555	anti-parallel
Strand 3	A	590	600	anti-parallel
Strand 4	A	582	587	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	49	first strand
Strand 2	B	59	67	anti-parallel
Strand 3	B	103	111	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	98	first strand
Strand 2	B	74	84	anti-parallel
Strand 3	B	118	128	anti-parallel
Strand 4	B	131	142	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	155	first strand
Strand 2	B	180	183	parallel
Strand 3	B	231	237	parallel
Strand 4	B	308	312	parallel
Strand 5	B	348	351	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	206	first strand
Strand 2	B	212	214	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	241	first strand
Strand 2	B	278	281	anti-parallel
Strand 3	B	267	269	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	320	321	first strand
Strand 2	B	327	328	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	371	374	first strand
Strand 2	B	403	406	parallel
Strand 3	B	437	439	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	418	419	first strand
Strand 2	B	458	459	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	442	443	first strand
Strand 2	B	446	447	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	487	488	first strand
Strand 2	B	509	516	anti-parallel
Strand 3	B	500	501	parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	487	488	first strand
Strand 2	B	509	516	anti-parallel
Strand 3	B	519	526	anti-parallel
Strand 4	B	603	610	anti-parallel
Strand 5	B	562	568	anti-parallel
Strand 6	B	578	579	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	493	494	first strand
Strand 2	B	548	556	anti-parallel
Strand 3	B	590	600	anti-parallel
Strand 4	B	582	587	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5AXH

Analysis of interatomic Contacts of Structural Units in PDB entry:
5AXH