Analysis of interatomic Contacts of Structural Units in PDB entry:
5AZP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AZP entry

There are 3 chains in PDB entry 5AZP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 1SER 446
B
 CYS 1HIS 450
C
 CYS 1ASP 345
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 5AZP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 21Right-handed 310
Helix 2
AA2
A
33 39Right-handed 310
Helix 3
AA3
A
40 54Right-handed alpha
Helix 4
AA4
A
54 76Right-handed alpha
Helix 5
AA5
A
77 79Right-handed 310
Helix 6
AA6
A
122 190Right-handed alpha
Helix 7
AA7
A
194 231Right-handed alpha
Helix 8
AA8
A
233 237Right-handed 310
Helix 9
AA9
A
257 259Right-handed 310
Helix 10
AB1
A
260 265Right-handed alpha
Helix 11
AB2
A
265 288Right-handed alpha
Helix 12
AB3
A
305 309Right-handed 310
Helix 13
AB4
A
311 313Right-handed 310
Helix 14
AB5
A
326 328Right-handed 310
Helix 15
AB6
A
329 400Right-handed alpha
Helix 16
AB7
A
403 440Right-handed alpha
Helix 17
AB8
B
17 22Right-handed 310
Helix 18
AB9
B
33 39Right-handed 310
Helix 19
AC1
B
40 54Right-handed alpha
Helix 20
AC2
B
54 76Right-handed alpha
Helix 21
AC3
B
77 79Right-handed 310
Helix 22
AC4
B
122 190Right-handed alpha
Helix 23
AC5
B
194 230Right-handed alpha
Helix 24
AC6
B
233 237Right-handed 310
Helix 25
AC7
B
257 259Right-handed 310
Helix 26
AC8
B
260 265Right-handed alpha
Helix 27
AC9
B
265 288Right-handed alpha
Helix 28
AD1
B
305 309Right-handed 310
Helix 29
AD2
B
311 313Right-handed 310
Helix 30
AD3
B
326 328Right-handed 310
Helix 31
AD4
B
329 399Right-handed alpha
Helix 32
AD5
B
403 440Right-handed alpha
Helix 33
AD6
C
17 22Right-handed 310
Helix 34
AD7
C
33 39Right-handed 310
Helix 35
AD8
C
40 54Right-handed alpha
Helix 36
AD9
C
54 76Right-handed alpha
Helix 37
AE1
C
77 79Right-handed 310
Helix 38
AE2
C
122 190Right-handed alpha
Helix 39
AE3
C
194 230Right-handed alpha
Helix 40
AE4
C
233 237Right-handed 310
Helix 41
AE5
C
257 259Right-handed 310
Helix 42
AE6
C
260 265Right-handed alpha
Helix 43
AE7
C
265 288Right-handed alpha
Helix 44
AE8
C
305 309Right-handed 310
Helix 45
AE9
C
311 313Right-handed 310
Helix 46
AF1
C
326 328Right-handed 310
Helix 47
AF2
C
329 399Right-handed alpha
Helix 48
AF3
C
403 440Right-handed alpha
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There are 4 sheets in PDB entry 5AZP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 26first strand
Strand 2
A
253 254parallel
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There are 13 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 95first strand
Strand 2
A
99 117anti-parallel
Strand 3
A
292 303anti-parallel
Strand 4
A
315 325anti-parallel
Strand 5
C
81 95anti-parallel
Strand 6
C
99 117anti-parallel
Strand 7
C
292 303anti-parallel
Strand 8
C
315 325anti-parallel
Strand 9
B
81 95anti-parallel
Strand 10
B
99 118anti-parallel
Strand 11
B
292 303anti-parallel
Strand 12
B
315 325anti-parallel
Strand 13
A
81 95anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 26first strand
Strand 2
B
253 254parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
25 26first strand
Strand 2
C
253 254parallel
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