Analysis of interatomic Contacts of Structural Units in PDB entry:
5B4W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5B4W entry

There are 4 chains in PDB entry 5B4W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 26	SER 481
B	THR 26	SER 481
C	THR 26	SER 481
D	PRO 24	PRO 30

There are 37 helices in PDB entry 5B4W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	114	117	Right-handed 310
Helix 2	AA2	A	193	197	Right-handed 310
Helix 3	AA3	A	210	215	Right-handed alpha
Helix 4	AA4	A	326	343	Right-handed alpha
Helix 5	AA5	A	369	375	Right-handed alpha
Helix 6	AA6	B	114	117	Right-handed 310
Helix 7	AA7	B	193	197	Right-handed 310
Helix 8	AA8	B	210	215	Right-handed alpha
Helix 9	AA9	B	270	272	Right-handed 310
Helix 10	AB1	B	326	343	Right-handed alpha
Helix 11	AB2	B	370	375	Right-handed alpha
Helix 12	AB3	C	114	117	Right-handed 310
Helix 13	AB4	C	193	197	Right-handed 310
Helix 14	AB5	C	210	215	Right-handed alpha
Helix 15	AB6	C	270	272	Right-handed 310
Helix 16	AB7	C	326	343	Right-handed alpha
Helix 17	AB8	C	370	375	Right-handed alpha
Helix 18	AB9	D	114	117	Right-handed 310
Helix 19	AC1	D	138	142	Right-handed 310
Helix 20	AC2	D	193	197	Right-handed 310
Helix 21	AC3	D	210	215	Right-handed alpha
Helix 22	AC4	D	326	343	Right-handed alpha
Helix 23	AC5	D	368	375	Right-handed alpha
Helix 24	AC6	E	113	118	Right-handed alpha
Helix 25	AC7	E	193	197	Right-handed 310
Helix 26	AC8	E	210	215	Right-handed alpha
Helix 27	AC9	E	326	343	Right-handed alpha
Helix 28	AD1	E	370	375	Right-handed alpha
Helix 29	AD2	E	481	485	Right-handed 310
Helix 30	AD3	E	487	494	Right-handed alpha
Helix 31	AD4	E	512	514	Right-handed 310
Helix 32	AD5	F	114	117	Right-handed 310
Helix 33	AD6	F	193	197	Right-handed 310
Helix 34	AD7	F	210	215	Right-handed alpha
Helix 35	AD8	F	270	272	Right-handed 310
Helix 36	AD9	F	326	343	Right-handed alpha
Helix 37	AE1	F	370	375	Right-handed alpha

There are 62 sheets in PDB entry 5B4W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3, AG4, AG5, AG6, AG7, AG8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	28	first strand
Strand 2	A	474	478	anti-parallel
Strand 3	A	465	469	anti-parallel
Strand 4	A	458	459	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	40	first strand
Strand 2	A	47	51	anti-parallel
Strand 3	A	54	58	anti-parallel
Strand 4	A	64	69	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	75	first strand
Strand 2	A	92	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	103	first strand
Strand 2	A	108	112	anti-parallel
Strand 3	A	119	122	anti-parallel
Strand 4	A	130	132	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	158	first strand
Strand 2	A	164	170	anti-parallel
Strand 3	A	184	188	anti-parallel
Strand 4	A	200	205	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	217	224	first strand
Strand 2	A	227	235	anti-parallel
Strand 3	A	244	252	anti-parallel
Strand 4	A	262	268	anti-parallel
Strand 5	A	386	388	parallel
Strand 6	A	354	356	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	217	224	first strand
Strand 2	A	227	235	anti-parallel
Strand 3	A	244	252	anti-parallel
Strand 4	A	262	268	anti-parallel
Strand 5	A	392	394	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	275	281	first strand
Strand 2	A	292	298	anti-parallel
Strand 3	A	319	325	anti-parallel
Strand 4	A	398	400	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	405	413	first strand
Strand 2	A	416	423	anti-parallel
Strand 3	A	427	432	anti-parallel
Strand 4	A	443	446	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	28	first strand
Strand 2	B	474	478	anti-parallel
Strand 3	B	465	469	anti-parallel
Strand 4	B	458	459	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	40	first strand
Strand 2	B	47	51	anti-parallel
Strand 3	B	54	58	anti-parallel
Strand 4	B	64	69	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	75	first strand
Strand 2	B	92	94	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	103	first strand
Strand 2	B	108	112	anti-parallel
Strand 3	B	119	123	anti-parallel
Strand 4	B	126	132	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	158	first strand
Strand 2	B	164	170	anti-parallel
Strand 3	B	184	188	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	217	224	first strand
Strand 2	B	227	235	anti-parallel
Strand 3	B	244	252	anti-parallel
Strand 4	B	262	268	anti-parallel
Strand 5	B	386	388	parallel
Strand 6	B	354	356	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	217	224	first strand
Strand 2	B	227	235	anti-parallel
Strand 3	B	244	252	anti-parallel
Strand 4	B	262	268	anti-parallel
Strand 5	B	392	394	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	281	first strand
Strand 2	B	292	298	anti-parallel
Strand 3	B	318	325	anti-parallel
Strand 4	B	398	401	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	405	413	first strand
Strand 2	B	416	423	anti-parallel
Strand 3	B	427	432	anti-parallel
Strand 4	B	443	446	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	28	first strand
Strand 2	C	474	478	anti-parallel
Strand 3	C	465	469	anti-parallel
Strand 4	C	458	459	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	40	first strand
Strand 2	C	47	51	anti-parallel
Strand 3	C	54	58	anti-parallel
Strand 4	C	64	69	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	73	75	first strand
Strand 2	C	92	94	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	103	first strand
Strand 2	C	107	112	anti-parallel
Strand 3	C	119	123	anti-parallel
Strand 4	C	130	132	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	152	157	first strand
Strand 2	C	165	170	anti-parallel
Strand 3	C	184	188	anti-parallel
Strand 4	C	200	205	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	217	224	first strand
Strand 2	C	227	235	anti-parallel
Strand 3	C	244	252	anti-parallel
Strand 4	C	262	268	anti-parallel
Strand 5	C	386	388	parallel
Strand 6	C	354	356	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	217	224	first strand
Strand 2	C	227	235	anti-parallel
Strand 3	C	244	252	anti-parallel
Strand 4	C	262	268	anti-parallel
Strand 5	C	392	394	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	275	281	first strand
Strand 2	C	292	300	anti-parallel
Strand 3	C	311	313	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	275	281	first strand
Strand 2	C	292	300	anti-parallel
Strand 3	C	319	325	anti-parallel
Strand 4	C	398	400	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	405	413	first strand
Strand 2	C	416	423	anti-parallel
Strand 3	C	427	432	anti-parallel
Strand 4	C	443	446	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	26	28	first strand
Strand 2	D	474	478	anti-parallel
Strand 3	D	465	469	anti-parallel
Strand 4	D	458	459	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	40	first strand
Strand 2	D	47	51	anti-parallel
Strand 3	D	54	58	anti-parallel
Strand 4	D	64	69	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	73	75	first strand
Strand 2	D	92	94	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	103	first strand
Strand 2	D	108	112	anti-parallel
Strand 3	D	119	122	anti-parallel
Strand 4	D	130	132	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	152	157	first strand
Strand 2	D	165	170	anti-parallel
Strand 3	D	184	188	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	217	224	first strand
Strand 2	D	227	235	anti-parallel
Strand 3	D	244	252	anti-parallel
Strand 4	D	262	268	anti-parallel
Strand 5	D	386	388	parallel
Strand 6	D	354	356	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	217	224	first strand
Strand 2	D	227	235	anti-parallel
Strand 3	D	244	252	anti-parallel
Strand 4	D	262	268	anti-parallel
Strand 5	D	392	394	parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	275	281	first strand
Strand 2	D	292	298	anti-parallel
Strand 3	D	319	325	anti-parallel
Strand 4	D	398	400	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	405	413	first strand
Strand 2	D	416	423	anti-parallel
Strand 3	D	427	432	anti-parallel
Strand 4	D	443	446	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	27	28	first strand
Strand 2	E	474	478	anti-parallel
Strand 3	E	465	469	anti-parallel
Strand 4	E	458	459	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	40	first strand
Strand 2	E	47	51	anti-parallel
Strand 3	E	54	58	anti-parallel
Strand 4	E	64	69	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	73	75	first strand
Strand 2	E	92	94	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	98	103	first strand
Strand 2	E	108	112	anti-parallel
Strand 3	E	119	123	anti-parallel
Strand 4	E	126	132	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	152	158	first strand
Strand 2	E	164	170	anti-parallel
Strand 3	E	184	188	anti-parallel

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There are 6 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	217	224	first strand
Strand 2	E	227	235	anti-parallel
Strand 3	E	244	252	anti-parallel
Strand 4	E	262	268	anti-parallel
Strand 5	E	386	388	parallel
Strand 6	E	354	356	anti-parallel

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There are 5 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	217	224	first strand
Strand 2	E	227	235	anti-parallel
Strand 3	E	244	252	anti-parallel
Strand 4	E	262	268	anti-parallel
Strand 5	E	392	394	parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	275	281	first strand
Strand 2	E	292	298	anti-parallel
Strand 3	E	319	325	anti-parallel
Strand 4	E	398	400	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	405	413	first strand
Strand 2	E	416	423	anti-parallel
Strand 3	E	427	432	anti-parallel
Strand 4	E	443	446	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	507	510	first strand
Strand 2	E	499	502	anti-parallel
Strand 3	E	523	525	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	27	28	first strand
Strand 2	F	474	478	anti-parallel
Strand 3	F	465	469	anti-parallel
Strand 4	F	458	459	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	40	first strand
Strand 2	F	47	51	anti-parallel
Strand 3	F	54	58	anti-parallel
Strand 4	F	64	69	anti-parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	73	75	first strand
Strand 2	F	92	94	anti-parallel

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There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	98	103	first strand
Strand 2	F	107	112	anti-parallel
Strand 3	F	119	123	anti-parallel
Strand 4	F	130	132	anti-parallel

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There are 3 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	152	158	first strand
Strand 2	F	164	170	anti-parallel
Strand 3	F	184	188	anti-parallel

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There are 6 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	217	224	first strand
Strand 2	F	227	235	anti-parallel
Strand 3	F	244	252	anti-parallel
Strand 4	F	262	268	anti-parallel
Strand 5	F	386	388	parallel
Strand 6	F	354	356	anti-parallel

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There are 5 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	217	224	first strand
Strand 2	F	227	235	anti-parallel
Strand 3	F	244	252	anti-parallel
Strand 4	F	262	268	anti-parallel
Strand 5	F	392	394	parallel

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There are 4 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	275	281	first strand
Strand 2	F	292	298	anti-parallel
Strand 3	F	318	325	anti-parallel
Strand 4	F	398	401	anti-parallel

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There are 4 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	405	413	first strand
Strand 2	F	416	423	anti-parallel
Strand 3	F	427	432	anti-parallel
Strand 4	F	443	446	anti-parallel

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There are 2 strands in AG3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	5	first strand
Strand 2	G	12	13	anti-parallel

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There are 2 strands in AG4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	5	first strand
Strand 2	H	12	13	anti-parallel

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There are 2 strands in AG5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	5	first strand
Strand 2	I	12	13	anti-parallel

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There are 2 strands in AG6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	4	5	first strand
Strand 2	J	12	13	anti-parallel

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There are 2 strands in AG7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	4	5	first strand
Strand 2	K	12	13	anti-parallel

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There are 2 strands in AG8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	5	first strand
Strand 2	L	12	13	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5B4W

Analysis of interatomic Contacts of Structural Units in PDB entry:
5B4W