Analysis of interatomic Contacts of Structural Units in PDB entry:
5B6M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5B6M entry

There are 6 chains in PDB entry 5B6M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 4	PRO 224
B	GLY 4	PRO 224
C	GLY 4	PRO 224
D	LEU 6	PRO 224
E	GLY 4	PRO 224
F	PRO 2	PRO 224

There are 38 helices in PDB entry 5B6M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	30	Right-handed alpha
Helix 2	AA2	A	44	57	Right-handed alpha
Helix 3	AA3	A	57	63	Right-handed alpha
Helix 4	AA4	A	75	90	Right-handed alpha
Helix 5	AA5	A	108	115	Right-handed alpha
Helix 6	AA6	A	156	173	Right-handed alpha
Helix 7	AA7	A	194	202	Right-handed alpha
Helix 8	AA8	B	25	30	Right-handed alpha
Helix 9	AA9	B	44	63	Right-handed alpha
Helix 10	AB1	B	75	91	Right-handed alpha
Helix 11	AB2	B	108	115	Right-handed alpha
Helix 12	AB3	B	156	173	Right-handed alpha
Helix 13	AB4	B	194	202	Right-handed alpha
Helix 14	AB5	C	25	30	Right-handed alpha
Helix 15	AB6	C	44	63	Right-handed alpha
Helix 16	AB7	C	75	90	Right-handed alpha
Helix 17	AB8	C	109	114	Right-handed alpha
Helix 18	AB9	C	156	173	Right-handed alpha
Helix 19	AC1	C	194	198	Right-handed 310
Helix 20	AC2	D	46	56	Right-handed alpha
Helix 21	AC3	D	57	62	Right-handed alpha
Helix 22	AC4	D	75	80	Right-handed alpha
Helix 23	AC5	D	109	115	Right-handed alpha
Helix 24	AC6	D	156	173	Right-handed alpha
Helix 25	AC7	D	194	202	Right-handed alpha
Helix 26	AC8	E	24	30	Right-handed alpha
Helix 27	AC9	E	44	64	Right-handed alpha
Helix 28	AD1	E	75	90	Right-handed alpha
Helix 29	AD2	E	108	114	Right-handed alpha
Helix 30	AD3	E	156	173	Right-handed alpha
Helix 31	AD4	E	194	202	Right-handed alpha
Helix 32	AD5	F	24	30	Right-handed alpha
Helix 33	AD6	F	44	57	Right-handed alpha
Helix 34	AD7	F	57	63	Right-handed alpha
Helix 35	AD8	F	75	90	Right-handed alpha
Helix 36	AD9	F	108	114	Right-handed alpha
Helix 37	AE1	F	156	173	Right-handed alpha
Helix 38	AE2	F	194	202	Right-handed alpha

There are 19 sheets in PDB entry 5B6M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	18	first strand
Strand 2	A	21	24	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	104	first strand
Strand 2	A	66	72	parallel
Strand 3	A	33	37	parallel
Strand 4	A	132	137	anti-parallel
Strand 5	A	143	149	anti-parallel
Strand 6	B	143	149	anti-parallel
Strand 7	B	132	137	anti-parallel
Strand 8	B	33	38	anti-parallel
Strand 9	B	66	72	parallel
Strand 10	B	102	104	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	122	first strand
Strand 2	A	128	130	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	176	first strand
Strand 2	A	187	189	anti-parallel
Strand 3	A	219	221	anti-parallel
Strand 4	A	207	208	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	18	first strand
Strand 2	B	21	24	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	122	first strand
Strand 2	B	128	130	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	176	first strand
Strand 2	B	187	189	anti-parallel
Strand 3	B	219	221	anti-parallel
Strand 4	B	207	208	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	16	first strand
Strand 2	C	23	24	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	104	first strand
Strand 2	C	66	72	parallel
Strand 3	C	33	38	parallel
Strand 4	C	132	137	anti-parallel
Strand 5	C	143	149	anti-parallel
Strand 6	D	143	148	anti-parallel
Strand 7	D	133	137	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	117	122	first strand
Strand 2	C	128	130	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	176	first strand
Strand 2	C	188	189	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	36	first strand
Strand 2	D	66	72	parallel
Strand 3	D	102	104	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	175	176	first strand
Strand 2	D	187	189	anti-parallel
Strand 3	D	219	221	anti-parallel
Strand 4	D	207	208	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	17	18	first strand
Strand 2	E	21	22	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	102	103	first strand
Strand 2	E	66	71	parallel
Strand 3	E	33	38	parallel
Strand 4	E	134	137	anti-parallel
Strand 5	E	143	148	anti-parallel
Strand 6	F	143	149	anti-parallel
Strand 7	F	132	137	anti-parallel
Strand 8	F	33	38	anti-parallel
Strand 9	F	66	72	parallel
Strand 10	F	102	104	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	117	122	first strand
Strand 2	E	128	130	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	175	176	first strand
Strand 2	E	187	189	anti-parallel
Strand 3	E	219	221	anti-parallel
Strand 4	E	207	208	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	117	122	first strand
Strand 2	F	128	130	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	175	176	first strand
Strand 2	F	187	189	anti-parallel
Strand 3	F	219	221	anti-parallel
Strand 4	F	207	208	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5B6M

Analysis of interatomic Contacts of Structural Units in PDB entry:
5B6M