Analysis of interatomic Contacts of Structural Units in PDB entry:
5B71


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5B71 entry

There are 6 chains in PDB entry 5B71 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 1CYS 217
B
 VAL 2TYR 225
C
 ASP 1ARG 214
D
 VAL 2TYR 225
E
 GLU 20TYR 121
F
 GLU 20TYR 121
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5B71. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
79 83Right-handed 310
Helix 2
AA2
A
124 130Right-handed alpha
Helix 3
AA3
A
186 192Right-handed alpha
Helix 4
AA4
A
215 217Right-handed 310
Helix 5
AA5
B
88 92Right-handed 310
Helix 6
AA6
B
101 105Right-handed 310
Helix 7
AA7
B
197 201Right-handed 310
Helix 8
AA8
C
79 83Right-handed 310
Helix 9
AA9
C
124 130Right-handed alpha
Helix 10
AB1
C
186 191Right-handed alpha
Helix 11
AB2
D
88 92Right-handed 310
Helix 12
AB3
D
195 201Right-handed 310
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There are 25 sheets in PDB entry 5B71. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 7first strand
Strand 2
A
19 25anti-parallel
Strand 3
A
70 75anti-parallel
Strand 4
A
62 65anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 13first strand
Strand 2
A
105 109parallel
Strand 3
A
85 90anti-parallel
Strand 4
A
33 38anti-parallel
Strand 5
A
45 49anti-parallel
Strand 6
A
53 54anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 121first strand
Strand 2
A
132 142anti-parallel
Strand 3
A
176 185anti-parallel
Strand 4
A
162 166anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 157first strand
Strand 2
A
147 153anti-parallel
Strand 3
A
194 201anti-parallel
Strand 4
A
208 213anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
18 25anti-parallel
Strand 3
B
79 84anti-parallel
Strand 4
B
69 73anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 12first strand
Strand 2
B
117 121parallel
Strand 3
B
93 99anti-parallel
Strand 4
B
34 40anti-parallel
Strand 5
B
46 53anti-parallel
Strand 6
B
59 61anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 12first strand
Strand 2
B
117 121parallel
Strand 3
B
93 99anti-parallel
Strand 4
B
112 113anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 134first strand
Strand 2
B
145 155anti-parallel
Strand 3
B
186 195anti-parallel
Strand 4
B
173 175anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 134first strand
Strand 2
B
145 155anti-parallel
Strand 3
B
186 195anti-parallel
Strand 4
B
179 180anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
161 164first strand
Strand 2
B
205 210anti-parallel
Strand 3
B
215 220anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 7first strand
Strand 2
C
19 25anti-parallel
Strand 3
C
70 75anti-parallel
Strand 4
C
62 66anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 13first strand
Strand 2
C
105 109parallel
Strand 3
C
85 90anti-parallel
Strand 4
C
33 38anti-parallel
Strand 5
C
45 48anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
117 121first strand
Strand 2
C
132 142anti-parallel
Strand 3
C
176 185anti-parallel
Strand 4
C
162 166anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
156 157first strand
Strand 2
C
147 153anti-parallel
Strand 3
C
194 201anti-parallel
Strand 4
C
208 213anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 7first strand
Strand 2
D
18 25anti-parallel
Strand 3
D
79 84anti-parallel
Strand 4
D
69 74anti-parallel
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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 12first strand
Strand 2
D
117 121parallel
Strand 3
D
93 99anti-parallel
Strand 4
D
34 40anti-parallel
Strand 5
D
46 53anti-parallel
Strand 6
D
59 61anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 12first strand
Strand 2
D
117 121parallel
Strand 3
D
93 99anti-parallel
Strand 4
D
112 113anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
130 134first strand
Strand 2
D
146 155anti-parallel
Strand 3
D
186 194anti-parallel
Strand 4
D
173 175anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
130 134first strand
Strand 2
D
146 155anti-parallel
Strand 3
D
186 194anti-parallel
Strand 4
D
179 180anti-parallel
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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
161 164first strand
Strand 2
D
204 210anti-parallel
Strand 3
D
215 221anti-parallel
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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
22 26first strand
Strand 2
E
36 44anti-parallel
Strand 3
E
80 86anti-parallel
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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
31 32first strand
Strand 2
E
112 120parallel
Strand 3
E
101 107anti-parallel
Strand 4
E
50 58anti-parallel
Strand 5
E
65 73anti-parallel
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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
22 26first strand
Strand 2
F
37 44anti-parallel
Strand 3
F
80 85anti-parallel
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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
31 32first strand
Strand 2
F
119 120parallel
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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
65 73first strand
Strand 2
F
50 58anti-parallel
Strand 3
F
102 107anti-parallel
Strand 4
F
112 117anti-parallel
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