Analysis of interatomic Contacts of Structural Units in PDB entry:
5BJ3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5BJ3 entry

There are 4 chains in PDB entry 5BJ3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 382
B
 MET 1LEU 382
C
 MET 1LEU 382
D
 MET 1LEU 382
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 64 helices in PDB entry 5BJ3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 9Right-handed alpha
Helix 2
2
A
47 58Right-handed alpha
Helix 3
3
A
71 85Right-handed alpha
Helix 4
4
A
91 93Right-handed 310
Helix 5
5
A
99 111Right-handed alpha
Helix 6
6
A
127 135Right-handed alpha
Helix 7
7
A
146 148Right-handed 310
Helix 8
8
A
154 160Right-handed alpha
Helix 9
9
A
183 196Right-handed alpha
Helix 10
10
A
218 220Right-handed 310
Helix 11
11
A
250 261Right-handed alpha
Helix 12
12
A
269 280Right-handed alpha
Helix 13
13
A
282 310Right-handed alpha
Helix 14
14
A
334 343Right-handed alpha
Helix 15
15
A
351 354Right-handed 310
Helix 16
16
A
368 380Right-handed alpha
Helix 17
17
B
6 9Right-handed alpha
Helix 18
18
B
47 58Right-handed alpha
Helix 19
19
B
71 85Right-handed alpha
Helix 20
20
B
91 93Right-handed 310
Helix 21
21
B
99 111Right-handed alpha
Helix 22
22
B
127 135Right-handed alpha
Helix 23
23
B
146 148Right-handed 310
Helix 24
24
B
154 160Right-handed alpha
Helix 25
25
B
183 196Right-handed alpha
Helix 26
26
B
218 220Right-handed 310
Helix 27
27
B
250 261Right-handed alpha
Helix 28
28
B
269 280Right-handed alpha
Helix 29
29
B
282 310Right-handed alpha
Helix 30
30
B
334 343Right-handed alpha
Helix 31
31
B
351 354Right-handed 310
Helix 32
32
B
368 380Right-handed alpha
Helix 33
33
C
6 9Right-handed alpha
Helix 34
34
C
47 58Right-handed alpha
Helix 35
35
C
71 85Right-handed alpha
Helix 36
36
C
91 93Right-handed 310
Helix 37
37
C
99 111Right-handed alpha
Helix 38
38
C
127 135Right-handed alpha
Helix 39
39
C
146 148Right-handed 310
Helix 40
40
C
154 160Right-handed alpha
Helix 41
41
C
183 196Right-handed alpha
Helix 42
42
C
218 220Right-handed 310
Helix 43
43
C
250 261Right-handed alpha
Helix 44
44
C
269 280Right-handed alpha
Helix 45
45
C
282 310Right-handed alpha
Helix 46
46
C
334 343Right-handed alpha
Helix 47
47
C
351 354Right-handed 310
Helix 48
48
C
368 380Right-handed alpha
Helix 49
49
D
6 9Right-handed alpha
Helix 50
50
D
47 58Right-handed alpha
Helix 51
51
D
71 85Right-handed alpha
Helix 52
52
D
91 93Right-handed 310
Helix 53
53
D
99 111Right-handed alpha
Helix 54
54
D
127 135Right-handed alpha
Helix 55
55
D
146 148Right-handed 310
Helix 56
56
D
154 160Right-handed alpha
Helix 57
57
D
183 196Right-handed alpha
Helix 58
58
D
218 220Right-handed 310
Helix 59
59
D
250 261Right-handed alpha
Helix 60
60
D
269 280Right-handed alpha
Helix 61
61
D
282 310Right-handed alpha
Helix 62
62
D
334 343Right-handed alpha
Helix 63
63
D
351 354Right-handed 310
Helix 64
64
D
368 380Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 5BJ3. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 97first strand
Strand 2
A
244 247anti-parallel
Strand 3
A
226 231anti-parallel
Strand 4
A
199 203parallel
Strand 5
A
165 171parallel
Strand 6
A
117 122parallel
Strand 7
A
138 143parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 326first strand
Strand 2
A
359 363anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 97first strand
Strand 2
B
244 247anti-parallel
Strand 3
B
226 231anti-parallel
Strand 4
B
199 203parallel
Strand 5
B
165 171parallel
Strand 6
B
117 122parallel
Strand 7
B
138 143parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
322 326first strand
Strand 2
B
359 363anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
94 97first strand
Strand 2
C
244 247anti-parallel
Strand 3
C
226 231anti-parallel
Strand 4
C
199 203parallel
Strand 5
C
165 171parallel
Strand 6
C
117 122parallel
Strand 7
C
138 143parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
322 326first strand
Strand 2
C
359 363anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
94 97first strand
Strand 2
D
244 247anti-parallel
Strand 3
D
226 231anti-parallel
Strand 4
D
199 203parallel
Strand 5
D
165 171parallel
Strand 6
D
117 122parallel
Strand 7
D
138 143parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
322 326first strand
Strand 2
D
359 363anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il