Analysis of interatomic Contacts of Structural Units in PDB entry:
5BJT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5BJT entry

There are 15 chains in PDB entry 5BJT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 5	LEU 267
B	ILE 1	MET 99
C	LEU 5	LEU 267
D	ILE 1	MET 99
E	LEU 5	LEU 267
F	ILE 1	MET 99
G	LEU 5	LEU 267
H	ILE 1	MET 99
P	ARG 1	GLY 16
Q	ARG 1	GLY 16
R	ARG 1	GLY 16
S	ARG 1	GLY 16
T	ARG 1	GLY 16
U	ARG 1	GLY 16
V	ARG 1	GLY 16

There are 27 helices in PDB entry 5BJT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	49	53	Right-handed 310
Helix 2	AA2	A	60	81	Right-handed alpha
Helix 3	AA3	A	132	143	Right-handed alpha
Helix 4	AA4	A	146	157	Right-handed alpha
Helix 5	AA5	A	157	170	Right-handed alpha
Helix 6	AA6	A	170	175	Right-handed alpha
Helix 7	AA7	A	246	248	Right-handed 310
Helix 8	AA8	C	49	52	Right-handed 310
Helix 9	AA9	C	60	81	Right-handed alpha
Helix 10	AB1	C	131	144	Right-handed alpha
Helix 11	AB2	C	146	157	Right-handed alpha
Helix 12	AB3	C	157	170	Right-handed alpha
Helix 13	AB4	C	170	175	Right-handed alpha
Helix 14	AB5	E	49	54	Right-handed 310
Helix 15	AB6	E	59	81	Right-handed alpha
Helix 16	AB7	E	131	143	Right-handed alpha
Helix 17	AB8	E	146	157	Right-handed alpha
Helix 18	AB9	E	157	170	Right-handed alpha
Helix 19	AC1	E	170	176	Right-handed alpha
Helix 20	AC2	E	246	248	Right-handed 310
Helix 21	AC3	G	59	61	Right-handed 310
Helix 22	AC4	G	62	78	Right-handed alpha
Helix 23	AC5	G	79	82	Right-handed 310
Helix 24	AC6	G	132	143	Right-handed alpha
Helix 25	AC7	G	146	156	Right-handed alpha
Helix 26	AC8	G	160	165	Right-handed alpha
Helix 27	AC9	G	167	174	Right-handed 310

There are 29 sheets in PDB entry 5BJT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	47	first strand
Strand 2	A	33	39	anti-parallel
Strand 3	A	24	30	anti-parallel
Strand 4	A	6	14	anti-parallel
Strand 5	A	89	98	anti-parallel
Strand 6	A	103	112	anti-parallel
Strand 7	A	116	119	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	47	first strand
Strand 2	A	33	39	anti-parallel
Strand 3	A	24	30	anti-parallel
Strand 4	A	6	14	anti-parallel
Strand 5	A	89	98	anti-parallel
Strand 6	A	103	112	anti-parallel
Strand 7	S	2	3	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	188	first strand
Strand 2	A	193	204	anti-parallel
Strand 3	A	234	243	anti-parallel
Strand 4	A	223	228	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	217	218	first strand
Strand 2	A	208	214	anti-parallel
Strand 3	A	250	256	anti-parallel
Strand 4	A	263	265	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	11	first strand
Strand 2	B	21	30	anti-parallel
Strand 3	B	62	70	anti-parallel
Strand 4	B	50	51	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	11	first strand
Strand 2	B	21	30	anti-parallel
Strand 3	B	62	70	anti-parallel
Strand 4	B	55	56	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	45	first strand
Strand 2	B	36	41	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	91	94	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	47	first strand
Strand 2	C	33	39	anti-parallel
Strand 3	C	24	30	anti-parallel
Strand 4	C	6	14	anti-parallel
Strand 5	C	89	98	anti-parallel
Strand 6	C	104	112	anti-parallel
Strand 7	C	115	121	anti-parallel
Strand 8	C	126	128	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	181	188	first strand
Strand 2	C	193	203	anti-parallel
Strand 3	C	234	243	anti-parallel
Strand 4	C	223	228	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	217	220	first strand
Strand 2	C	209	214	anti-parallel
Strand 3	C	250	255	anti-parallel
Strand 4	C	263	265	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	11	first strand
Strand 2	D	21	30	anti-parallel
Strand 3	D	62	70	anti-parallel
Strand 4	D	50	51	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	11	first strand
Strand 2	D	21	30	anti-parallel
Strand 3	D	62	70	anti-parallel
Strand 4	D	55	56	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	45	first strand
Strand 2	D	36	41	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	91	94	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	47	first strand
Strand 2	E	33	39	anti-parallel
Strand 3	E	24	30	anti-parallel
Strand 4	E	6	14	anti-parallel
Strand 5	E	89	98	anti-parallel
Strand 6	E	104	112	anti-parallel
Strand 7	E	115	119	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	184	187	first strand
Strand 2	E	193	198	anti-parallel
Strand 3	E	239	243	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	200	203	first strand
Strand 2	E	234	236	anti-parallel
Strand 3	E	226	228	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	217	218	first strand
Strand 2	E	209	214	anti-parallel
Strand 3	E	250	255	anti-parallel
Strand 4	E	263	265	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	11	first strand
Strand 2	F	21	30	anti-parallel
Strand 3	F	62	70	anti-parallel
Strand 4	F	50	51	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	11	first strand
Strand 2	F	21	30	anti-parallel
Strand 3	F	62	70	anti-parallel
Strand 4	F	55	56	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	44	45	first strand
Strand 2	F	36	41	anti-parallel
Strand 3	F	79	83	anti-parallel
Strand 4	F	91	94	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	33	34	first strand
Strand 2	G	29	30	anti-parallel
Strand 3	G	6	8	anti-parallel
Strand 4	G	95	97	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	38	39	first strand
Strand 2	G	24	26	anti-parallel
Strand 3	G	11	13	anti-parallel
Strand 4	G	90	92	anti-parallel
Strand 5	G	109	112	anti-parallel
Strand 6	G	115	120	anti-parallel
Strand 7	G	127	129	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	181	183	first strand
Strand 2	G	198	201	anti-parallel
Strand 3	G	235	238	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	194	195	first strand
Strand 2	G	241	242	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	9	11	first strand
Strand 2	H	21	25	anti-parallel
Strand 3	H	66	70	anti-parallel
Strand 4	H	50	51	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	28	30	first strand
Strand 2	H	62	63	anti-parallel
Strand 3	H	55	56	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	44	45	first strand
Strand 2	H	35	41	anti-parallel
Strand 3	H	78	84	anti-parallel
Strand 4	H	93	95	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	7	8	first strand
Strand 2	T	11	12	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	4	5	first strand
Strand 2	U	14	15	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5BJT

Analysis of interatomic Contacts of Structural Units in PDB entry:
5BJT