Analysis of interatomic Contacts of Structural Units in PDB entry:
5BNZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5BNZ entry

There are 2 chains in PDB entry 5BNZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 8	GLN 555
B	ALA 8	GLN 555

There are 34 helices in PDB entry 5BNZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	23	Right-handed alpha
Helix 2	AA2	A	42	59	Right-handed alpha
Helix 3	AA3	A	75	90	Right-handed alpha
Helix 4	AA4	A	104	118	Right-handed alpha
Helix 5	AA5	A	127	136	Right-handed alpha
Helix 6	AA6	A	151	164	Right-handed alpha
Helix 7	AA7	A	184	188	Right-handed 310
Helix 8	AA8	A	212	225	Right-handed alpha
Helix 9	AA9	A	234	237	Right-handed 310
Helix 10	AB1	A	238	249	Right-handed alpha
Helix 11	AB2	A	271	281	Right-handed alpha
Helix 12	AB3	A	294	302	Right-handed alpha
Helix 13	AB4	A	304	316	Right-handed alpha
Helix 14	AB5	A	326	341	Right-handed alpha
Helix 15	AB6	A	392	394	Right-handed 310
Helix 16	AB7	A	490	495	Right-handed 310
Helix 17	AB8	A	510	515	Right-handed 310
Helix 18	AB9	B	11	24	Right-handed alpha
Helix 19	AC1	B	42	59	Right-handed alpha
Helix 20	AC2	B	75	91	Right-handed alpha
Helix 21	AC3	B	104	118	Right-handed alpha
Helix 22	AC4	B	127	136	Right-handed alpha
Helix 23	AC5	B	151	164	Right-handed alpha
Helix 24	AC6	B	184	188	Right-handed 310
Helix 25	AC7	B	212	225	Right-handed alpha
Helix 26	AC8	B	234	237	Right-handed 310
Helix 27	AC9	B	238	249	Right-handed alpha
Helix 28	AD1	B	271	281	Right-handed alpha
Helix 29	AD2	B	294	302	Right-handed alpha
Helix 30	AD3	B	304	316	Right-handed alpha
Helix 31	AD4	B	326	341	Right-handed alpha
Helix 32	AD5	B	392	394	Right-handed 310
Helix 33	AD6	B	490	495	Right-handed 310
Helix 34	AD7	B	510	515	Right-handed 310

There are 12 sheets in PDB entry 5BNZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	33	first strand
Strand 2	A	62	67	parallel
Strand 3	A	99	100	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	124	first strand
Strand 2	A	173	176	anti-parallel
Strand 3	A	191	195	anti-parallel
Strand 4	A	209	211	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	232	first strand
Strand 2	A	256	260	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	344	first strand
Strand 2	A	520	523	parallel
Strand 3	A	527	531	anti-parallel
Strand 4	A	543	547	anti-parallel
Strand 5	A	466	473	parallel
Strand 6	A	500	508	anti-parallel
Strand 7	A	346	347	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	456	457	first strand
Strand 2	A	410	413	parallel
Strand 3	A	418	426	anti-parallel
Strand 4	A	432	440	anti-parallel
Strand 5	A	350	355	parallel
Strand 6	A	386	390	anti-parallel
Strand 7	A	460	461	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	369	first strand
Strand 2	A	378	384	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	33	first strand
Strand 2	B	62	67	parallel
Strand 3	B	99	100	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	124	first strand
Strand 2	B	173	176	anti-parallel
Strand 3	B	191	195	anti-parallel
Strand 4	B	209	211	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	228	232	first strand
Strand 2	B	256	260	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	343	344	first strand
Strand 2	B	520	523	parallel
Strand 3	B	527	531	anti-parallel
Strand 4	B	543	547	anti-parallel
Strand 5	B	466	473	parallel
Strand 6	B	500	508	anti-parallel
Strand 7	B	346	347	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	456	457	first strand
Strand 2	B	410	413	parallel
Strand 3	B	418	426	anti-parallel
Strand 4	B	432	440	anti-parallel
Strand 5	B	350	355	parallel
Strand 6	B	386	390	anti-parallel
Strand 7	B	460	461	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	363	369	first strand
Strand 2	B	378	384	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5BNZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5BNZ