Analysis of interatomic Contacts of Structural Units in PDB entry:
5BPN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5BPN entry

There is 1 chain in PDB entry 5BPN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 6MET 381
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5BPN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
52 58Right-handed alpha
Helix 2
AA2
A
62 64Right-handed 310
Helix 3
AA3
A
69 74Right-handed alpha
Helix 4
AA4
A
80 87Right-handed alpha
Helix 5
AA5
A
88 90Right-handed 310
Helix 6
AA6
A
115 136Right-handed alpha
Helix 7
AA7
A
151 165Right-handed alpha
Helix 8
AA8
A
175 183Right-handed alpha
Helix 9
AA9
A
184 188Right-handed 310
Helix 10
AB1
A
229 250Right-handed alpha
Helix 11
AB2
A
252 255Right-handed 310
Helix 12
AB3
A
256 274Right-handed alpha
Helix 13
AB4
A
299 306Right-handed alpha
Helix 14
AB5
A
306 325Right-handed alpha
Helix 15
AB6
A
327 331Right-handed 310
Helix 16
AB7
A
338 342Right-handed 310
Helix 17
AB8
A
343 354Right-handed alpha
Helix 18
AB9
A
367 381Right-handed alpha
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There are 6 sheets in PDB entry 5BPN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 28first strand
Strand 2
A
15 22anti-parallel
Strand 3
A
38 39anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 28first strand
Strand 2
A
15 22anti-parallel
Strand 3
A
7 11anti-parallel
Strand 4
A
141 146parallel
Strand 5
A
168 174parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 51first strand
Strand 2
A
42 44anti-parallel
Strand 3
A
66 67anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 95first strand
Strand 2
A
102 107anti-parallel
Strand 3
A
110 114anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 225first strand
Strand 2
A
205 213anti-parallel
Strand 3
A
192 200anti-parallel
Strand 4
A
333 337parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 288first strand
Strand 2
A
291 298anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il