Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 5BPO entry
There are 6 chains in PDB entry 5BPO
(CSU analysis of residue contacts immediately below table)
Chain ID |
Initial residue | Terminal residue |
A
|
GLY 1 | ASN 21 |
B
|
PHE 1 | TYR 26 |
B
|
PRO 28 | PRO 28 |
C
|
GLY 1 | ASN 21 |
D
|
VAL 2 | TYR 26 |
D
|
PRO 28 | PRO 28 |
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There are 8
helices in PDB entry 5BPO. Click on helix of interest for
CSU analysis.
Helix number
| Helix ID | Chain ID |
Initial residue | Terminal residue |
Helix class |
Helix 1 |
AA1 | A
| 1 |
7 | Right-handed alpha |
Helix 2 |
AA2 | A
| 12 |
18 | Right-handed alpha |
Helix 3 |
AA3 | B
| 8 |
20 | Right-handed alpha |
Helix 4 |
AA4 | B
| 21 |
23 | Right-handed 310 |
Helix 5 |
AA5 | C
| 2 |
7 | Right-handed alpha |
Helix 6 |
AA6 | C
| 12 |
18 | Right-handed alpha |
Helix 7 |
AA7 | D
| 8 |
20 | Right-handed alpha |
Helix 8 |
AA8 | D
| 21 |
23 | Right-handed 310 |
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There are no sheets in PDB entry
5BPO
Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il