Analysis of interatomic Contacts of Structural Units in PDB entry:
5BRM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5BRM entry

There are 4 chains in PDB entry 5BRM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 52LEU 211
B
 ASP 52GLY 212
C
 ASP 52LEU 211
D
 ASP 52LEU 204
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 5BRM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
52 74Right-handed alpha
Helix 2
AA2
A
75 79Right-handed 310
Helix 3
AA3
A
110 127Right-handed alpha
Helix 4
AA4
A
143 173Right-handed alpha
Helix 5
AA5
A
175 193Right-handed alpha
Helix 6
AA6
A
201 203Right-handed 310
Helix 7
AA7
A
204 211Right-handed alpha
Helix 8
AA8
B
53 74Right-handed alpha
Helix 9
AA9
B
75 79Right-handed 310
Helix 10
AB1
B
110 127Right-handed alpha
Helix 11
AB2
B
143 166Right-handed alpha
Helix 12
AB3
B
166 173Right-handed alpha
Helix 13
AB4
B
175 194Right-handed alpha
Helix 14
AB5
B
201 203Right-handed 310
Helix 15
AB6
B
204 211Right-handed alpha
Helix 16
AB7
C
53 74Right-handed alpha
Helix 17
AB8
C
75 79Right-handed 310
Helix 18
AB9
C
110 127Right-handed alpha
Helix 19
AC1
C
143 173Right-handed alpha
Helix 20
AC2
C
175 193Right-handed alpha
Helix 21
AC3
C
201 203Right-handed 310
Helix 22
AC4
C
204 211Right-handed alpha
Helix 23
AC5
D
53 74Right-handed alpha
Helix 24
AC6
D
110 127Right-handed alpha
Helix 25
AC7
D
143 173Right-handed alpha
Helix 26
AC8
D
175 194Right-handed alpha
Helix 27
AC9
D
201 203Right-handed 310
Helix 28
AD1
D
204 211Right-handed alpha
Helix 29
AD2
E
53 74Right-handed alpha
Helix 30
AD3
E
75 79Right-handed 310
Helix 31
AD4
E
110 127Right-handed alpha
Helix 32
AD5
E
143 173Right-handed alpha
Helix 33
AD6
E
175 193Right-handed alpha
Helix 34
AD7
E
197 203Right-handed 310
Helix 35
AD8
E
204 211Right-handed alpha
Helix 36
AD9
F
53 74Right-handed alpha
Helix 37
AE1
F
75 79Right-handed 310
Helix 38
AE2
F
110 127Right-handed alpha
Helix 39
AE3
F
143 166Right-handed alpha
Helix 40
AE4
F
166 173Right-handed alpha
Helix 41
AE5
F
175 193Right-handed alpha
Helix 42
AE6
F
197 203Right-handed 310
Helix 43
AE7
F
204 211Right-handed alpha
Helix 44
AE8
G
391 395Right-handed 310
Helix 45
AE9
H
393 398Right-handed alpha
Helix 46
AF1
I
392 398Right-handed 310
Helix 47
AF2
J
393 398Right-handed 310
Helix 48
AF3
K
393 398Right-handed 310
Helix 49
AF4
L
393 397Right-handed 310
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There are 5 sheets in PDB entry 5BRM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 88first strand
Strand 2
A
93 95anti-parallel
Strand 3
G
379 381anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 88first strand
Strand 2
B
93 95anti-parallel
Strand 3
H
379 381anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
94 95first strand
Strand 2
I
379 380anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
94 95first strand
Strand 2
J
379 380anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
93 94first strand
Strand 2
L
380 381anti-parallel
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