Analysis of interatomic Contacts of Structural Units in PDB entry:
5BRZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5BRZ entry

There are 5 chains in PDB entry 5BRZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1PRO 275
B
 MET 0MET 99
C
 GLU 1TYR 9
D
 ALA 2PRO 198
E
 ALA 3ASP 243
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5BRZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 55Right-handed 310
Helix 2
AA2
A
56 85Right-handed alpha
Helix 3
AA3
A
137 150Right-handed alpha
Helix 4
AA4
A
151 162Right-handed alpha
Helix 5
AA5
A
162 175Right-handed alpha
Helix 6
AA6
A
175 180Right-handed alpha
Helix 7
AA7
D
187 192Right-handed alpha
Helix 8
AA8
E
83 87Right-handed 310
Helix 9
AA9
E
115 119Right-handed 310
Helix 10
AB1
E
130 138Right-handed alpha
Helix 11
AB2
E
197 201Right-handed alpha
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There are 17 sheets in PDB entry 5BRZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 47first strand
Strand 2
A
31 37anti-parallel
Strand 3
A
18 28anti-parallel
Strand 4
A
3 14anti-parallel
Strand 5
A
94 103anti-parallel
Strand 6
A
109 118anti-parallel
Strand 7
A
121 126anti-parallel
Strand 8
A
133 135anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 193first strand
Strand 2
A
198 208anti-parallel
Strand 3
A
241 250anti-parallel
Strand 4
A
228 230anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 193first strand
Strand 2
A
198 208anti-parallel
Strand 3
A
241 250anti-parallel
Strand 4
A
234 235anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 223first strand
Strand 2
A
213 219anti-parallel
Strand 3
A
257 263anti-parallel
Strand 4
A
270 272anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 11first strand
Strand 2
B
21 30anti-parallel
Strand 3
B
62 70anti-parallel
Strand 4
B
50 51anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 11first strand
Strand 2
B
21 30anti-parallel
Strand 3
B
62 70anti-parallel
Strand 4
B
55 56anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 46first strand
Strand 2
B
36 41anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
91 94anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
5 6first strand
Strand 2
D
20 26anti-parallel
Strand 3
D
73 78anti-parallel
Strand 4
D
63 68anti-parallel
Strand 5
D
57 60anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 15first strand
Strand 2
D
109 114parallel
Strand 3
D
87 95anti-parallel
Strand 4
D
31 39anti-parallel
Strand 5
D
45 51anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 15first strand
Strand 2
D
109 114parallel
Strand 3
D
87 95anti-parallel
Strand 4
D
104 105anti-parallel
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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
158 159first strand
Strand 2
D
176 180anti-parallel
Strand 3
D
136 141anti-parallel
Strand 4
D
123 129anti-parallel
Strand 5
E
123 128anti-parallel
Strand 6
E
139 149anti-parallel
Strand 7
E
187 196anti-parallel
Strand 8
E
169 171anti-parallel
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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
158 159first strand
Strand 2
D
176 180anti-parallel
Strand 3
D
136 141anti-parallel
Strand 4
D
123 129anti-parallel
Strand 5
E
123 128anti-parallel
Strand 6
E
139 149anti-parallel
Strand 7
E
187 196anti-parallel
Strand 8
E
176 177anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
165 166first strand
Strand 2
D
173 174anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
6 8first strand
Strand 2
E
20 25anti-parallel
Strand 3
E
75 79anti-parallel
Strand 4
E
65 69anti-parallel
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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
11 15first strand
Strand 2
E
108 113parallel
Strand 3
E
88 95anti-parallel
Strand 4
E
32 39anti-parallel
Strand 5
E
43 51anti-parallel
Strand 6
E
54 58anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
11 15first strand
Strand 2
E
108 113parallel
Strand 3
E
88 95anti-parallel
Strand 4
E
102 104anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
163 165first strand
Strand 2
E
154 160anti-parallel
Strand 3
E
206 213anti-parallel
Strand 4
E
232 239anti-parallel
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