Analysis of interatomic Contacts of Structural Units in PDB entry:
5BSK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5BSK entry

There are 4 chains in PDB entry 5BSK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 4ALA 217
B
 PRO 5ALA 217
C
 SER 4LYS 216
D
 PRO 5LYS 216
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 5BSK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 21Right-handed 310
Helix 2
AA2
A
24 28Right-handed 310
Helix 3
AA3
A
37 56Right-handed alpha
Helix 4
AA4
A
70 86Right-handed alpha
Helix 5
AA5
A
121 125Right-handed 310
Helix 6
AA6
A
139 150Right-handed alpha
Helix 7
AA7
A
208 215Right-handed alpha
Helix 8
AA8
B
17 21Right-handed 310
Helix 9
AA9
B
24 28Right-handed 310
Helix 10
AB1
B
37 57Right-handed alpha
Helix 11
AB2
B
70 87Right-handed alpha
Helix 12
AB3
B
139 150Right-handed alpha
Helix 13
AB4
B
151 153Right-handed 310
Helix 14
AB5
B
208 215Right-handed alpha
Helix 15
AB6
C
17 21Right-handed 310
Helix 16
AB7
C
24 28Right-handed 310
Helix 17
AB8
C
37 56Right-handed alpha
Helix 18
AB9
C
70 87Right-handed alpha
Helix 19
AC1
C
139 152Right-handed alpha
Helix 20
AC2
C
208 215Right-handed alpha
Helix 21
AC3
D
17 21Right-handed 310
Helix 22
AC4
D
24 29Right-handed 310
Helix 23
AC5
D
37 56Right-handed alpha
Helix 24
AC6
D
70 87Right-handed alpha
Helix 25
AC7
D
121 125Right-handed 310
Helix 26
AC8
D
139 150Right-handed alpha
Helix 27
AC9
D
151 153Right-handed 310
Helix 28
AD1
D
208 215Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 5BSK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 8first strand
Strand 2
A
177 182parallel
Strand 3
A
156 165parallel
Strand 4
A
128 136parallel
Strand 5
A
61 66parallel
Strand 6
A
94 99parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 36first strand
Strand 2
A
204 207anti-parallel
Strand 3
A
187 188anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 8first strand
Strand 2
B
177 182parallel
Strand 3
B
156 165parallel
Strand 4
B
128 136parallel
Strand 5
B
61 66parallel
Strand 6
B
94 99parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 36first strand
Strand 2
B
204 207anti-parallel
Strand 3
B
187 188anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
7 8first strand
Strand 2
C
177 182parallel
Strand 3
C
156 165parallel
Strand 4
C
128 136parallel
Strand 5
C
61 67parallel
Strand 6
C
94 100parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
31 36first strand
Strand 2
C
204 207anti-parallel
Strand 3
C
187 188anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
7 8first strand
Strand 2
D
177 182parallel
Strand 3
D
156 165parallel
Strand 4
D
128 136parallel
Strand 5
D
61 66parallel
Strand 6
D
94 99parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
31 36first strand
Strand 2
D
204 207anti-parallel
Strand 3
D
187 188anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il