Analysis of interatomic Contacts of Structural Units in PDB entry:
5BSV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5BSV entry

There is 1 chain in PDB entry 5BSV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 8LEU 536
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5BSV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 32Right-handed alpha
Helix 2
AA2
A
34 38Right-handed 310
Helix 3
AA3
A
55 72Right-handed alpha
Helix 4
AA4
A
87 100Right-handed alpha
Helix 5
AA5
A
112 124Right-handed alpha
Helix 6
AA6
A
131 137Right-handed 310
Helix 7
AA7
A
138 146Right-handed alpha
Helix 8
AA8
A
162 167Right-handed alpha
Helix 9
AA9
A
169 173Right-handed 310
Helix 10
AB1
A
203 215Right-handed alpha
Helix 11
AB2
A
237 244Right-handed alpha
Helix 12
AB3
A
244 252Right-handed alpha
Helix 13
AB4
A
262 274Right-handed alpha
Helix 14
AB5
A
281 291Right-handed alpha
Helix 15
AB6
A
292 297Right-handed 310
Helix 16
AB7
A
313 321Right-handed alpha
Helix 17
AB8
A
336 339Right-handed 310
Helix 18
AB9
A
346 349Right-handed 310
Helix 19
AC1
A
402 410Right-handed alpha
Helix 20
AC2
A
448 458Right-handed alpha
Helix 21
AC3
A
492 502Right-handed alpha
Helix 22
AC4
A
505 509Right-handed 310
Helix 23
AC5
A
528 536Right-handed alpha
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There are 8 sheets in PDB entry 5BSV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 54first strand
Strand 2
A
42 46anti-parallel
Strand 3
A
254 257parallel
Strand 4
A
228 231parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 106first strand
Strand 2
A
79 82parallel
Strand 3
A
127 130parallel
Strand 4
A
148 151parallel
Strand 5
A
160 161parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 185first strand
Strand 2
A
197 202anti-parallel
Strand 3
A
188 189anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 185first strand
Strand 2
A
197 202anti-parallel
Strand 3
A
398 399anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 280first strand
Strand 2
A
304 307parallel
Strand 3
A
328 334parallel
Strand 4
A
341 344anti-parallel
Strand 5
A
362 363anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 372first strand
Strand 2
A
386 391anti-parallel
Strand 3
A
416 424anti-parallel
Strand 4
A
430 435anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
440 442first strand
Strand 2
A
445 447anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
462 472first strand
Strand 2
A
476 485anti-parallel
Strand 3
A
512 515parallel
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