Analysis of interatomic Contacts of Structural Units in PDB entry:
5BSW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5BSW entry

There are 2 chains in PDB entry 5BSW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 9	LYS 534
B	VAL 8	ALA 533

There are 47 helices in PDB entry 5BSW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	26	32	Right-handed alpha
Helix 2	AA2	A	34	38	Right-handed 310
Helix 3	AA3	A	55	72	Right-handed alpha
Helix 4	AA4	A	87	100	Right-handed alpha
Helix 5	AA5	A	112	124	Right-handed alpha
Helix 6	AA6	A	132	137	Right-handed 310
Helix 7	AA7	A	138	145	Right-handed alpha
Helix 8	AA8	A	162	167	Right-handed alpha
Helix 9	AA9	A	203	215	Right-handed alpha
Helix 10	AB1	A	237	244	Right-handed alpha
Helix 11	AB2	A	244	252	Right-handed alpha
Helix 12	AB3	A	262	273	Right-handed alpha
Helix 13	AB4	A	281	291	Right-handed alpha
Helix 14	AB5	A	292	297	Right-handed 310
Helix 15	AB6	A	313	322	Right-handed alpha
Helix 16	AB7	A	344	348	Right-handed 310
Helix 17	AB8	A	401	409	Right-handed alpha
Helix 18	AB9	A	436	438	Right-handed 310
Helix 19	AC1	A	447	458	Right-handed alpha
Helix 20	AC2	A	491	501	Right-handed alpha
Helix 21	AC3	A	502	503	Right-handed 310
Helix 22	AC4	A	504	508	Right-handed 310
Helix 23	AC5	A	527	534	Right-handed alpha
Helix 24	AC6	B	26	32	Right-handed alpha
Helix 25	AC7	B	34	38	Right-handed 310
Helix 26	AC8	B	55	72	Right-handed alpha
Helix 27	AC9	B	87	100	Right-handed alpha
Helix 28	AD1	B	112	124	Right-handed alpha
Helix 29	AD2	B	131	133	Right-handed 310
Helix 30	AD3	B	134	145	Right-handed alpha
Helix 31	AD4	B	162	167	Right-handed alpha
Helix 32	AD5	B	169	173	Right-handed 310
Helix 33	AD6	B	203	215	Right-handed alpha
Helix 34	AD7	B	237	244	Right-handed alpha
Helix 35	AD8	B	244	252	Right-handed alpha
Helix 36	AD9	B	262	274	Right-handed alpha
Helix 37	AE1	B	281	290	Right-handed alpha
Helix 38	AE2	B	292	297	Right-handed 310
Helix 39	AE3	B	313	324	Right-handed alpha
Helix 40	AE4	B	345	348	Right-handed 310
Helix 41	AE5	B	401	409	Right-handed alpha
Helix 42	AE6	B	436	438	Right-handed 310
Helix 43	AE7	B	447	457	Right-handed alpha
Helix 44	AE8	B	491	501	Right-handed alpha
Helix 45	AE9	B	502	503	Right-handed 310
Helix 46	AF1	B	504	508	Right-handed 310
Helix 47	AF2	B	527	533	Right-handed alpha

There are 17 sheets in PDB entry 5BSW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	54	first strand
Strand 2	A	42	46	anti-parallel
Strand 3	A	254	257	parallel
Strand 4	A	228	231	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	106	first strand
Strand 2	A	79	83	parallel
Strand 3	A	127	130	parallel
Strand 4	A	148	151	parallel
Strand 5	A	160	161	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	185	first strand
Strand 2	A	197	202	anti-parallel
Strand 3	A	188	189	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	185	first strand
Strand 2	A	197	202	anti-parallel
Strand 3	A	397	398	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	277	280	first strand
Strand 2	A	304	307	parallel
Strand 3	A	328	331	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	335	first strand
Strand 2	A	339	343	anti-parallel
Strand 3	A	361	362	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	367	371	first strand
Strand 2	A	385	390	anti-parallel
Strand 3	A	415	423	anti-parallel
Strand 4	A	429	434	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	439	441	first strand
Strand 2	A	444	446	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	461	471	first strand
Strand 2	A	475	484	anti-parallel
Strand 3	A	511	514	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	54	first strand
Strand 2	B	42	46	anti-parallel
Strand 3	B	254	257	parallel
Strand 4	B	228	231	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	106	first strand
Strand 2	B	79	82	parallel
Strand 3	B	125	130	parallel
Strand 4	B	148	151	parallel
Strand 5	B	159	161	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	185	first strand
Strand 2	B	197	202	anti-parallel
Strand 3	B	188	189	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	185	first strand
Strand 2	B	197	202	anti-parallel
Strand 3	B	397	398	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	277	280	first strand
Strand 2	B	304	307	parallel
Strand 3	B	328	335	parallel
Strand 4	B	339	343	anti-parallel
Strand 5	B	361	362	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	367	371	first strand
Strand 2	B	385	390	anti-parallel
Strand 3	B	415	423	anti-parallel
Strand 4	B	429	434	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	439	441	first strand
Strand 2	B	444	446	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	461	471	first strand
Strand 2	B	475	484	anti-parallel
Strand 3	B	511	514	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5BSW

Analysis of interatomic Contacts of Structural Units in PDB entry:
5BSW