Analysis of interatomic Contacts of Structural Units in PDB entry:
5BVD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5BVD entry

There is 1 chain in PDB entry 5BVD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 7TYR 356
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 19 helices in PDB entry 5BVD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 76Right-handed alpha
Helix 2
AA2
A
110 117Right-handed alpha
Helix 3
AA3
A
120 141Right-handed alpha
Helix 4
AA4
A
149 151Right-handed 310
Helix 5
AA5
A
188 192Right-handed 310
Helix 6
AA6
A
193 199Right-handed alpha
Helix 7
AA7
A
205 222Right-handed alpha
Helix 8
AA8
A
230 243Right-handed alpha
Helix 9
AA9
A
246 251Right-handed alpha
Helix 10
AB1
A
255 264Right-handed alpha
Helix 11
AB2
A
272 277Right-handed alpha
Helix 12
AB3
A
281 292Right-handed alpha
Helix 13
AB4
A
295 299Right-handed 310
Helix 14
AB5
A
301 307Right-handed alpha
Helix 15
AB6
A
308 312Right-handed 310
Helix 16
AB7
A
316 320Right-handed 310
Helix 17
AB8
A
332 336Right-handed 310
Helix 18
AB9
A
337 350Right-handed alpha
Helix 19
AC1
A
351 353Right-handed 310
Back to top of page

There are 3 sheets in PDB entry 5BVD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 12first strand
Strand 2
A
15 17anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 32first strand
Strand 2
A
35 42anti-parallel
Strand 3
A
47 54anti-parallel
Strand 4
A
99 104anti-parallel
Strand 5
A
86 88anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 109first strand
Strand 2
A
153 155anti-parallel
Strand 3
A
161 163anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il