Analysis of interatomic Contacts of Structural Units in PDB entry:
5BY8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5BY8 entry

There are 2 chains in PDB entry 5BY8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 23GLN 253
B
 ARG 18PRO 102
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 5BY8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 53Right-handed alpha
Helix 2
AA2
A
73 83Right-handed alpha
Helix 3
AA3
A
151 155Right-handed 310
Helix 4
AA4
A
158 173Right-handed alpha
Helix 5
AA5
A
183 185Right-handed 310
Helix 6
AA6
A
243 251Right-handed alpha
Helix 7
AA7
B
33 35Right-handed 310
Helix 8
AA8
B
51 75Right-handed alpha
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There are 2 sheets in PDB entry 5BY8. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 62first strand
Strand 2
A
30 35parallel
Strand 3
A
87 92parallel
Strand 4
A
100 107anti-parallel
Strand 5
A
110 119anti-parallel
Strand 6
A
222 240anti-parallel
Strand 7
A
203 214anti-parallel
Strand 8
A
187 193anti-parallel
Strand 9
A
145 149parallel
Strand 10
B
37 40parallel
Strand 11
B
30 32anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 181first strand
Strand 2
B
83 87anti-parallel
Strand 3
B
77 80anti-parallel
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