Analysis of interatomic Contacts of Structural Units in PDB entry:
5BYC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5BYC entry

There are 2 chains in PDB entry 5BYC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 10HIS 327
B
 TRP 11HIS 326
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5BYC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
53 65Right-handed alpha
Helix 2
AA2
A
78 91Right-handed alpha
Helix 3
AA3
A
125 131Right-handed 310
Helix 4
AA4
A
132 138Right-handed alpha
Helix 5
AA5
A
139 145Right-handed alpha
Helix 6
AA6
A
156 170Right-handed alpha
Helix 7
AA7
A
187 192Right-handed alpha
Helix 8
AA8
A
200 208Right-handed alpha
Helix 9
AA9
A
213 226Right-handed alpha
Helix 10
AB1
A
237 239Right-handed 310
Helix 11
AB2
A
266 282Right-handed alpha
Helix 12
AB3
A
286 302Right-handed alpha
Helix 13
AB4
A
306 311Right-handed 310
Helix 14
AB5
A
313 317Right-handed 310
Helix 15
AB6
A
318 323Right-handed 310
Helix 16
AB7
B
53 65Right-handed alpha
Helix 17
AB8
B
78 91Right-handed alpha
Helix 18
AB9
B
125 131Right-handed 310
Helix 19
AC1
B
132 138Right-handed alpha
Helix 20
AC2
B
139 145Right-handed alpha
Helix 21
AC3
B
156 170Right-handed alpha
Helix 22
AC4
B
187 192Right-handed alpha
Helix 23
AC5
B
200 208Right-handed alpha
Helix 24
AC6
B
213 226Right-handed alpha
Helix 25
AC7
B
237 239Right-handed 310
Helix 26
AC8
B
266 282Right-handed alpha
Helix 27
AC9
B
286 302Right-handed alpha
Helix 28
AD1
B
306 311Right-handed 310
Helix 29
AD2
B
313 317Right-handed 310
Helix 30
AD3
B
318 323Right-handed 310
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There are 4 sheets in PDB entry 5BYC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 101first strand
Strand 2
A
69 76parallel
Strand 3
A
18 21parallel
Strand 4
A
148 151parallel
Strand 5
A
173 176parallel
Strand 6
A
195 199parallel
Strand 7
A
231 235parallel
Strand 8
A
241 245anti-parallel
Strand 9
A
252 254anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 52first strand
Strand 2
A
25 31anti-parallel
Strand 3
A
107 113parallel
Strand 4
A
119 124anti-parallel
Strand 5
B
41 43parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 43first strand
Strand 2
B
119 124parallel
Strand 3
B
107 113anti-parallel
Strand 4
B
25 31parallel
Strand 5
B
46 52anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 101first strand
Strand 2
B
69 76parallel
Strand 3
B
18 21parallel
Strand 4
B
148 151parallel
Strand 5
B
173 176parallel
Strand 6
B
195 199parallel
Strand 7
B
231 235parallel
Strand 8
B
241 245anti-parallel
Strand 9
B
252 254anti-parallel
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