Analysis of interatomic Contacts of Structural Units in PDB entry:
5C1E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5C1E entry

There is 1 chain in PDB entry 5C1E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 29TYR 327
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 5 helices in PDB entry 5C1E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 58Right-handed alpha
Helix 2
AA2
A
109 114Right-handed alpha
Helix 3
AA3
A
116 120Right-handed 310
Helix 4
AA4
A
310 316Right-handed alpha
Helix 5
AA5
A
318 322Right-handed 310
Back to top of page

There are 3 sheets in PDB entry 5C1E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 41first strand
Strand 2
A
64 68parallel
Strand 3
A
85 89parallel
Strand 4
A
130 132parallel
Strand 5
A
156 159parallel
Strand 6
A
176 180parallel
Strand 7
A
196 200parallel
Strand 8
A
226 229parallel
Strand 9
A
256 260parallel
Strand 10
A
283 287parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 74first strand
Strand 2
A
102 106parallel
Strand 3
A
135 138parallel
Strand 4
A
162 164parallel
Strand 5
A
183 186parallel
Strand 6
A
203 206parallel
Strand 7
A
232 235parallel
Strand 8
A
263 264parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 79first strand
Strand 2
A
122 124parallel
Strand 3
A
149 152parallel
Strand 4
A
170 174parallel
Strand 5
A
191 193parallel
Strand 6
A
210 215parallel
Strand 7
A
245 248parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il