Analysis of interatomic Contacts of Structural Units in PDB entry:
5C52


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5C52 entry

There are 5 chains in PDB entry 5C52 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 78LYS 1228
B
 ALA 68VAL 485
C
 LEU 67VAL 485
T
 A 1 T 26
P
 A 3 A 23
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 5C52. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
96 110Right-handed alpha
Helix 2
AA2
A
134 159Right-handed alpha
Helix 3
AA3
A
179 183Right-handed 310
Helix 4
AA4
A
203 206Right-handed 310
Helix 5
AA5
A
270 276Right-handed alpha
Helix 6
AA6
A
277 282Right-handed 310
Helix 7
AA7
A
294 303Right-handed alpha
Helix 8
AA8
A
305 313Right-handed alpha
Helix 9
AA9
A
355 364Right-handed alpha
Helix 10
AB1
A
375 380Right-handed alpha
Helix 11
AB2
A
382 387Right-handed alpha
Helix 12
AB3
A
388 418Right-handed alpha
Helix 13
AB4
A
420 430Right-handed alpha
Helix 14
AB5
A
439 470Right-handed alpha
Helix 15
AB6
A
477 482Right-handed 310
Helix 16
AB7
A
541 554Right-handed alpha
Helix 17
AB8
A
570 576Right-handed alpha
Helix 18
AB9
A
598 604Right-handed alpha
Helix 19
AC1
A
650 660Right-handed alpha
Helix 20
AC2
A
786 798Right-handed alpha
Helix 21
AC3
A
798 803Right-handed alpha
Helix 22
AC4
A
804 810Right-handed alpha
Helix 23
AC5
A
822 827Right-handed alpha
Helix 24
AC6
A
873 878Right-handed 310
Helix 25
AC7
A
894 908Right-handed alpha
Helix 26
AC8
A
915 921Right-handed alpha
Helix 27
AC9
A
930 937Right-handed alpha
Helix 28
AD1
A
943 955Right-handed alpha
Helix 29
AD2
A
958 971Right-handed alpha
Helix 30
AD3
A
973 985Right-handed alpha
Helix 31
AD4
A
1057 1064Right-handed alpha
Helix 32
AD5
A
1092 1122Right-handed alpha
Helix 33
AD6
A
1145 1167Right-handed alpha
Helix 34
AD7
B
70 77Right-handed alpha
Helix 35
AD8
B
87 94Right-handed alpha
Helix 36
AD9
B
100 117Right-handed alpha
Helix 37
AE1
B
185 191Right-handed alpha
Helix 38
AE2
B
192 199Right-handed alpha
Helix 39
AE3
B
244 246Right-handed 310
Helix 40
AE4
B
247 265Right-handed alpha
Helix 41
AE5
B
308 315Right-handed alpha
Helix 42
AE6
B
318 323Right-handed 310
Helix 43
AE7
B
342 353Right-handed alpha
Helix 44
AE8
B
396 409Right-handed alpha
Helix 45
AE9
B
424 434Right-handed alpha
Helix 46
AF1
B
444 450Right-handed alpha
Helix 47
AF2
B
467 484Right-handed alpha
Helix 48
AF3
C
87 93Right-handed alpha
Helix 49
AF4
C
100 117Right-handed alpha
Helix 50
AF5
C
186 192Right-handed alpha
Helix 51
AF6
C
195 200Right-handed alpha
Helix 52
AF7
C
244 246Right-handed 310
Helix 53
AF8
C
247 266Right-handed alpha
Helix 54
AF9
C
308 313Right-handed alpha
Helix 55
AG1
C
342 354Right-handed alpha
Helix 56
AG2
C
392 408Right-handed alpha
Helix 57
AG3
C
425 435Right-handed alpha
Helix 58
AG4
C
445 449Right-handed 310
Helix 59
AG5
C
470 482Right-handed alpha
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There are 11 sheets in PDB entry 5C52. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 187first strand
Strand 2
A
174 178anti-parallel
Strand 3
A
220 224anti-parallel
Strand 4
A
209 215anti-parallel
Strand 5
A
198 201anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 196first strand
Strand 2
A
265 268parallel
Strand 3
A
290 293parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
435 438first strand
Strand 2
A
837 840anti-parallel
Strand 3
A
814 815anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
845 848first strand
Strand 2
A
853 855anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1130 1133first strand
Strand 2
A
1136 1142anti-parallel
Strand 3
A
884 890anti-parallel
Strand 4
A
1183 1186anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 127first strand
Strand 2
B
206 218parallel
Strand 3
B
230 243anti-parallel
Strand 4
B
334 341anti-parallel
Strand 5
B
296 306anti-parallel
Strand 6
B
285 293anti-parallel
Strand 7
B
274 279anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
324 325first strand
Strand 2
B
330 331anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
413 416first strand
Strand 2
B
383 387parallel
Strand 3
B
439 443parallel
Strand 4
B
453 457anti-parallel
Strand 5
B
463 466anti-parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
125 127first strand
Strand 2
C
206 218parallel
Strand 3
C
230 243anti-parallel
Strand 4
C
334 341anti-parallel
Strand 5
C
298 306anti-parallel
Strand 6
C
286 291anti-parallel
Strand 7
C
273 278anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
324 325first strand
Strand 2
C
330 331anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
413 415first strand
Strand 2
C
383 387parallel
Strand 3
C
439 443parallel
Strand 4
C
452 456anti-parallel
Strand 5
C
463 467anti-parallel
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