Analysis of interatomic Contacts of Structural Units in PDB entry:
5C56


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5C56 entry

There are 2 chains in PDB entry 5C56 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLY 617GLU 629
A
 PRO 556ASN 1083
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5C56. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
560 562Right-handed 310
Helix 2
AA2
A
573 576Right-handed 310
Helix 3
AA3
A
601 614Right-handed alpha
Helix 4
AA4
A
616 620Right-handed 310
Helix 5
AA5
A
647 652Right-handed alpha
Helix 6
AA6
A
667 672Right-handed alpha
Helix 7
AA7
A
712 715Right-handed 310
Helix 8
AA8
A
716 724Right-handed alpha
Helix 9
AA9
A
752 757Right-handed alpha
Helix 10
AB1
A
772 778Right-handed 310
Helix 11
AB2
A
782 792Right-handed alpha
Helix 12
AB3
A
818 830Right-handed alpha
Helix 13
AB4
A
833 835Right-handed 310
Helix 14
AB5
A
860 866Right-handed alpha
Helix 15
AB6
A
884 891Right-handed alpha
Helix 16
AB7
A
917 929Right-handed alpha
Helix 17
AB8
A
958 962Right-handed 310
Helix 18
AB9
A
976 980Right-handed 310
Helix 19
AC1
A
1016 1028Right-handed alpha
Helix 20
AC2
A
1031 1036Right-handed alpha
Helix 21
AC3
A
1059 1063Right-handed 310
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There are 5 sheets in PDB entry 5C56. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
592 597first strand
Strand 2
A
564 571anti-parallel
Strand 3
A
658 663parallel
Strand 4
A
621 628anti-parallel
Strand 5
A
632 635anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
698 708first strand
Strand 2
A
684 693anti-parallel
Strand 3
A
765 770parallel
Strand 4
A
732 739anti-parallel
Strand 5
A
742 745anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
809 814first strand
Strand 2
A
793 800anti-parallel
Strand 3
A
875 880parallel
Strand 4
A
837 843anti-parallel
Strand 5
A
846 853anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
905 910first strand
Strand 2
A
894 899anti-parallel
Strand 3
A
970 974parallel
Strand 4
A
939 945anti-parallel
Strand 5
A
948 953anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1003 1012first strand
Strand 2
A
987 995anti-parallel
Strand 3
A
1076 1080parallel
Strand 4
A
1039 1044anti-parallel
Strand 5
A
1047 1050anti-parallel
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